Package org.pharmgkb.parser.vcf.model

Class VcfSample

java.lang.Object

org.pharmgkb.parser.vcf.model.VcfSample

public class VcfSample
extends Object

This class contains sample data for a VCF position line.

Constructor Summary

Constructors

Constructor	Description
VcfSample(LinkedHashMap<String,String> properties)
VcfSample(List<String> keys, List<String> values)

Method Summary

Modifier and Type	Method	Description
void	clearProperties()
boolean	containsProperty(String key)
boolean	containsProperty(ReservedFormatProperty key)
String	getProperty(String key)
<T> T	getProperty(ReservedFormatProperty key)	Returns the value for the reserved property as the type specified by both ReservedFormatProperty.getType() and ReservedFormatProperty.isList().
Set<String>	getPropertyKeys()
Set<Map.Entry<String,String>>	propertyEntrySet()
void	putProperty(String key, String value)
void	putProperty(ReservedFormatProperty key, String value)
void	removeProperty(String key)
void	removeProperty(ReservedFormatProperty key)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

VcfSample

public VcfSample(@Nullable
 List<String> keys,
 @Nullable
 List<String> values)

VcfSample

public VcfSample(@Nonnull
 LinkedHashMap<String,String> properties)

Method Details

getProperty

@Nullable
public String getProperty(@Nonnull
 String key)

getProperty

@Nullable
public <T> T getProperty(@Nonnull
 ReservedFormatProperty key)

Returns the value for the reserved property as the type specified by both ReservedFormatProperty.getType() and ReservedFormatProperty.isList().

Type Parameters:

T - The type specified by ReservedInfoProperty.getType() if ReservedFormatProperty.isList() is false; otherwise List<V> where V is the type specified by ReservedFormatProperty.getType().

containsProperty

public boolean containsProperty(@Nonnull
 String key)

containsProperty

public boolean containsProperty(@Nonnull
 ReservedFormatProperty key)

putProperty

public void putProperty(@Nonnull
 String key,
 @Nullable
 String value)

putProperty

public void putProperty(@Nonnull
 ReservedFormatProperty key,
 @Nullable
 String value)

removeProperty

public void removeProperty(@Nonnull
 String key)

removeProperty

public void removeProperty(@Nonnull
 ReservedFormatProperty key)

clearProperties

public void clearProperties()

getPropertyKeys

@Nonnull
public Set<String> getPropertyKeys()

Returns:

A set of the property keys, which has guaranteed order

propertyEntrySet

@Nonnull
public Set<Map.Entry<String,String>> propertyEntrySet()