Package org.pharmgkb.parser.vcf
package org.pharmgkb.parser.vcf
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ClassDescriptionA simple
VcfLineParserthat loads an entire VCF file into memory to permit constant-time lookup for VCF records, either: By any ID listed in theIDfield, or By chromosome and positionWhat to do when a duplicate VCF record (line) is encountered.Applies a transformation to a VCF file.This exception indicates a VCF format error was found while parsing the VCF file.This interface controls what is actually done for each data line in a VCF file.This class parses a VCF file.A transformation applied to VCF data lines and metadata.Contains static methods for handling properties in INFO and FORMAT fields.