All Classes
| Class | Description |
|---|---|
| Command |
Commands provide commands for jphyloref to run.
|
| JPhyloRef |
Main class for JPhyloRef.
|
| JSONLDHelper |
JSONLDHelper provides methods to help read and process JSON-LD files.
|
| OWLHelper |
OWLHelper contains methods simplify accessing information from the OWL API.
|
| PhylorefHelper |
A Phyloreference helper class.
|
| PhylorefHelper.PhylorefStatus |
A wrapper for a phyloref status at a particular point in time.
|
| ReasonerHelper |
The ReasonerHelper provides methods to help create and manage OWL Reasoners, and to allow the
user to choose a different reasoner to carry out any specified task.
|
| ResolveCommand |
Resolve an ontology of phyloreferences provided on the command line, and report on the resolution
of each clade definition.
|
| TestCommand |
Test whether the phyloreferences in the provided ontology resolve correctly.
|
| WebserverCommand |
Sets up a webserver that allows reasoning over phyloreferences over HTTP.
|