All Classes
Class
Description
Commands provide commands for jphyloref to run.
Main class for JPhyloRef.
JSONLDHelper provides methods to help read and process JSON-LD files.
OWLHelper contains methods simplify accessing information from the OWL API.
A Phyloreference helper class.
A wrapper for a phyloref status at a particular point in time.
The ReasonerHelper provides methods to help create and manage OWL Reasoners, and to allow the
user to choose a different reasoner to carry out any specified task.
Resolve an ontology of phyloreferences provided on the command line, and report on the resolution
of each clade definition.
Test whether the phyloreferences in the provided ontology resolve correctly.
Sets up a webserver that allows reasoning over phyloreferences over HTTP.