Package org.sbml.jsbml.ext.arrays.compiler

Class ArraysCompiler

java.lang.Object

org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler

All Implemented Interfaces:

org.sbml.jsbml.util.compilers.ASTNodeCompiler

public class ArraysCompiler
extends java.lang.Object
implements org.sbml.jsbml.util.compilers.ASTNodeCompiler

This compiler is used to evaluate an ASTNode object to a real number.

Since:

1.0

Author:

Leandro Watanabe

Constructor Summary

Constructors

Constructor	Description
ArraysCompiler()	Constructs an ArraysCompiler object.
ArraysCompiler(ArraysCompiler obj)	Clone constructor

Method Summary

Modifier and Type	Method	Description
org.sbml.jsbml.util.compilers.ASTNodeValue	abs(org.sbml.jsbml.ASTNode value)
java.lang.Double	addValue(java.lang.String name, double value)	Adds a new string,double pair to the idToValue.
org.sbml.jsbml.util.compilers.ASTNodeValue	and(java.util.List<org.sbml.jsbml.ASTNode> values)
org.sbml.jsbml.util.compilers.ASTNodeValue	arccos(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	arccosh(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	arccot(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	arccoth(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	arccsc(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	arccsch(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	arcsec(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	arcsech(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	arcsin(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	arcsinh(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	arctan(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	arctanh(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	ceiling(org.sbml.jsbml.ASTNode value)
ArraysCompiler	clone()
org.sbml.jsbml.util.compilers.ASTNodeValue	compile(double mantissa, int exponent, java.lang.String units)
org.sbml.jsbml.util.compilers.ASTNodeValue	compile(double real, java.lang.String units)
org.sbml.jsbml.util.compilers.ASTNodeValue	compile(int integer, java.lang.String units)
org.sbml.jsbml.util.compilers.ASTNodeValue	compile(java.lang.String name)
org.sbml.jsbml.util.compilers.ASTNodeValue	compile(org.sbml.jsbml.CallableSBase variable)
org.sbml.jsbml.util.compilers.ASTNodeValue	compile(org.sbml.jsbml.Compartment c)
org.sbml.jsbml.util.compilers.ASTNodeValue	cos(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	cosh(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	cot(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	coth(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	csc(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	csch(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	delay(java.lang.String delayName, org.sbml.jsbml.ASTNode x, org.sbml.jsbml.ASTNode delay, java.lang.String timeUnits)
org.sbml.jsbml.util.compilers.ASTNodeValue	eq(org.sbml.jsbml.ASTNode left, org.sbml.jsbml.ASTNode right)
org.sbml.jsbml.util.compilers.ASTNodeValue	exp(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	factorial(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	floor(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	frac(int numerator, int denominator)
org.sbml.jsbml.util.compilers.ASTNodeValue	frac(org.sbml.jsbml.ASTNode numerator, org.sbml.jsbml.ASTNode denominator)
org.sbml.jsbml.util.compilers.ASTNodeValue	function(java.lang.String functionDefinitionName, java.util.List<org.sbml.jsbml.ASTNode> args)
org.sbml.jsbml.util.compilers.ASTNodeValue	function(org.sbml.jsbml.FunctionDefinition functionDefinition, java.util.List<org.sbml.jsbml.ASTNode> args)
org.sbml.jsbml.util.compilers.ASTNodeValue	functionCsymbol(org.sbml.jsbml.ASTNode csymbol)
org.sbml.jsbml.util.compilers.ASTNodeValue	geq(org.sbml.jsbml.ASTNode left, org.sbml.jsbml.ASTNode right)
org.sbml.jsbml.util.compilers.ASTNodeValue	getConstantAvogadro(java.lang.String name)
org.sbml.jsbml.util.compilers.ASTNodeValue	getConstantE()
org.sbml.jsbml.util.compilers.ASTNodeValue	getConstantFalse()
org.sbml.jsbml.util.compilers.ASTNodeValue	getConstantPi()
org.sbml.jsbml.util.compilers.ASTNodeValue	getConstantTrue()
int	getFieldCount()	Returns the number of values in this ArraysCompiler.
java.util.Map<java.lang.String,java.lang.Double>	getMapIdToValue()	Returns the idToValue Map.
org.sbml.jsbml.util.compilers.ASTNodeValue	getNegativeInfinity()
org.sbml.jsbml.util.compilers.ASTNodeValue	getPositiveInfinity()
org.sbml.jsbml.util.compilers.ASTNodeValue	getRateOf(org.sbml.jsbml.ASTNode name)
double	getValue(java.lang.String name)	Gets an element from the idToValue, with the given id.
org.sbml.jsbml.util.compilers.ASTNodeValue	gt(org.sbml.jsbml.ASTNode left, org.sbml.jsbml.ASTNode right)
org.sbml.jsbml.util.compilers.ASTNodeValue	implies(java.util.List<org.sbml.jsbml.ASTNode> values)
boolean	isSetidToValue()	Returns true, if idToValue contains at least one element.
org.sbml.jsbml.util.compilers.ASTNodeValue	lambda(java.util.List<org.sbml.jsbml.ASTNode> values)
org.sbml.jsbml.util.compilers.ASTNodeValue	leq(org.sbml.jsbml.ASTNode left, org.sbml.jsbml.ASTNode right)
org.sbml.jsbml.util.compilers.ASTNodeValue	ln(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	log(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	log(org.sbml.jsbml.ASTNode base, org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	lt(org.sbml.jsbml.ASTNode left, org.sbml.jsbml.ASTNode right)
org.sbml.jsbml.util.compilers.ASTNodeValue	max(java.util.List<org.sbml.jsbml.ASTNode> values)
org.sbml.jsbml.util.compilers.ASTNodeValue	min(java.util.List<org.sbml.jsbml.ASTNode> values)
org.sbml.jsbml.util.compilers.ASTNodeValue	minus(java.util.List<org.sbml.jsbml.ASTNode> values)
org.sbml.jsbml.util.compilers.ASTNodeValue	neq(org.sbml.jsbml.ASTNode left, org.sbml.jsbml.ASTNode right)
org.sbml.jsbml.util.compilers.ASTNodeValue	not(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	or(java.util.List<org.sbml.jsbml.ASTNode> values)
org.sbml.jsbml.util.compilers.ASTNodeValue	piecewise(java.util.List<org.sbml.jsbml.ASTNode> values)
org.sbml.jsbml.util.compilers.ASTNodeValue	plus(java.util.List<org.sbml.jsbml.ASTNode> values)
org.sbml.jsbml.util.compilers.ASTNodeValue	pow(org.sbml.jsbml.ASTNode base, org.sbml.jsbml.ASTNode exponent)
org.sbml.jsbml.util.compilers.ASTNodeValue	quotient(java.util.List<org.sbml.jsbml.ASTNode> values)
org.sbml.jsbml.util.compilers.ASTNodeValue	rem(java.util.List<org.sbml.jsbml.ASTNode> values)
double	removeField(java.lang.String id)	Removes an element from the idToValue.
org.sbml.jsbml.util.compilers.ASTNodeValue	root(double rootExponent, org.sbml.jsbml.ASTNode radiant)
org.sbml.jsbml.util.compilers.ASTNodeValue	root(org.sbml.jsbml.ASTNode rootExponent, org.sbml.jsbml.ASTNode radiant)
org.sbml.jsbml.util.compilers.ASTNodeValue	sec(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	sech(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	selector(java.util.List<org.sbml.jsbml.ASTNode> nodes)
void	setidToValue(java.util.Map<java.lang.String,java.lang.Double> idToValue)	Sets the given map.
org.sbml.jsbml.util.compilers.ASTNodeValue	sin(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	sinh(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	sqrt(org.sbml.jsbml.ASTNode radiant)
org.sbml.jsbml.util.compilers.ASTNodeValue	symbolTime(java.lang.String time)
org.sbml.jsbml.util.compilers.ASTNodeValue	tan(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	tanh(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	times(java.util.List<org.sbml.jsbml.ASTNode> values)
org.sbml.jsbml.util.compilers.ASTNodeValue	uMinus(org.sbml.jsbml.ASTNode value)
org.sbml.jsbml.util.compilers.ASTNodeValue	unknownValue()
boolean	unsetidToValue()	Returns true, if idToValue contain at least one element, otherwise false.
org.sbml.jsbml.util.compilers.ASTNodeValue	vector(java.util.List<org.sbml.jsbml.ASTNode> nodes)
org.sbml.jsbml.util.compilers.ASTNodeValue	xor(java.util.List<org.sbml.jsbml.ASTNode> values)

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ArraysCompiler

public ArraysCompiler()

Constructs an ArraysCompiler object.

ArraysCompiler

public ArraysCompiler(ArraysCompiler obj)

Clone constructor

Parameters:

obj - the instance to clone

Method Detail

clone

public ArraysCompiler clone()

Overrides:

clone in class java.lang.Object

isSetidToValue

public boolean isSetidToValue()

Returns true, if idToValue contains at least one element.

Returns:

true, if idToValue contains at least one element, otherwise false.

getMapIdToValue

public java.util.Map<java.lang.String,java.lang.Double> getMapIdToValue()

Returns the idToValue Map. Creates it if it is not already existing.

Returns:

the idToValue Map.

setidToValue

public void setidToValue(java.util.Map<java.lang.String,java.lang.Double> idToValue)

Sets the given map. If idToValue was defined before and contains some elements, they are all unset.

Parameters:

idToValue -

unsetidToValue

public boolean unsetidToValue()

Returns true, if idToValue contain at least one element, otherwise false.

Returns:

true, if idToValue contain at least one element, otherwise false.

addValue

public java.lang.Double addValue(java.lang.String name,
                                 double value)

Adds a new string,double pair to the idToValue.

The idToValue is initialized if necessary.

Parameters:

name - the element name to add to the map

value - the value of the element to add to the map

Returns:

as specified by Map.put(K, V)

removeField

public double removeField(java.lang.String id)

Removes an element from the idToValue.

Parameters:

id - the id of the element to be removed from the list.

Returns:

the removed element, if it was successfully found and removed.

getValue

public double getValue(java.lang.String name)

Gets an element from the idToValue, with the given id.

Parameters:

name - the id of the element to get.

Returns:

the value of the element from the idToValue with the given id.

getFieldCount

public int getFieldCount()

Returns the number of values in this ArraysCompiler.

Returns:

abs

public org.sbml.jsbml.util.compilers.ASTNodeValue abs(org.sbml.jsbml.ASTNode value)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

abs in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

and

public org.sbml.jsbml.util.compilers.ASTNodeValue and(java.util.List<org.sbml.jsbml.ASTNode> values)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

and in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arccos

public org.sbml.jsbml.util.compilers.ASTNodeValue arccos(org.sbml.jsbml.ASTNode value)
                                                  throws org.sbml.jsbml.SBMLException

Specified by:

arccos in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arccosh

public org.sbml.jsbml.util.compilers.ASTNodeValue arccosh(org.sbml.jsbml.ASTNode value)
                                                   throws org.sbml.jsbml.SBMLException

Specified by:

arccosh in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arccot

public org.sbml.jsbml.util.compilers.ASTNodeValue arccot(org.sbml.jsbml.ASTNode value)
                                                  throws org.sbml.jsbml.SBMLException

Specified by:

arccot in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arccoth

public org.sbml.jsbml.util.compilers.ASTNodeValue arccoth(org.sbml.jsbml.ASTNode value)
                                                   throws org.sbml.jsbml.SBMLException

Specified by:

arccoth in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arccsc

public org.sbml.jsbml.util.compilers.ASTNodeValue arccsc(org.sbml.jsbml.ASTNode value)
                                                  throws org.sbml.jsbml.SBMLException

Specified by:

arccsc in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arccsch

public org.sbml.jsbml.util.compilers.ASTNodeValue arccsch(org.sbml.jsbml.ASTNode value)
                                                   throws org.sbml.jsbml.SBMLException

Specified by:

arccsch in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arcsec

public org.sbml.jsbml.util.compilers.ASTNodeValue arcsec(org.sbml.jsbml.ASTNode value)
                                                  throws org.sbml.jsbml.SBMLException

Specified by:

arcsec in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arcsech

public org.sbml.jsbml.util.compilers.ASTNodeValue arcsech(org.sbml.jsbml.ASTNode value)
                                                   throws org.sbml.jsbml.SBMLException

Specified by:

arcsech in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arcsin

public org.sbml.jsbml.util.compilers.ASTNodeValue arcsin(org.sbml.jsbml.ASTNode value)
                                                  throws org.sbml.jsbml.SBMLException

Specified by:

arcsin in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arcsinh

public org.sbml.jsbml.util.compilers.ASTNodeValue arcsinh(org.sbml.jsbml.ASTNode value)
                                                   throws org.sbml.jsbml.SBMLException

Specified by:

arcsinh in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arctan

public org.sbml.jsbml.util.compilers.ASTNodeValue arctan(org.sbml.jsbml.ASTNode value)
                                                  throws org.sbml.jsbml.SBMLException

Specified by:

arctan in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

arctanh

public org.sbml.jsbml.util.compilers.ASTNodeValue arctanh(org.sbml.jsbml.ASTNode value)
                                                   throws org.sbml.jsbml.SBMLException

Specified by:

arctanh in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

ceiling

public org.sbml.jsbml.util.compilers.ASTNodeValue ceiling(org.sbml.jsbml.ASTNode value)
                                                   throws org.sbml.jsbml.SBMLException

Specified by:

ceiling in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

compile

public org.sbml.jsbml.util.compilers.ASTNodeValue compile(org.sbml.jsbml.Compartment c)

Specified by:

compile in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

compile

public org.sbml.jsbml.util.compilers.ASTNodeValue compile(double mantissa,
                                                          int exponent,
                                                          java.lang.String units)

Specified by:

compile in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

compile

public org.sbml.jsbml.util.compilers.ASTNodeValue compile(double real,
                                                          java.lang.String units)

Specified by:

compile in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

compile

public org.sbml.jsbml.util.compilers.ASTNodeValue compile(int integer,
                                                          java.lang.String units)

Specified by:

compile in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

compile

public org.sbml.jsbml.util.compilers.ASTNodeValue compile(org.sbml.jsbml.CallableSBase variable)
                                                   throws org.sbml.jsbml.SBMLException

Specified by:

compile in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

compile

public org.sbml.jsbml.util.compilers.ASTNodeValue compile(java.lang.String name)

Specified by:

compile in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

cos

public org.sbml.jsbml.util.compilers.ASTNodeValue cos(org.sbml.jsbml.ASTNode value)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

cos in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

cosh

public org.sbml.jsbml.util.compilers.ASTNodeValue cosh(org.sbml.jsbml.ASTNode value)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

cosh in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

cot

public org.sbml.jsbml.util.compilers.ASTNodeValue cot(org.sbml.jsbml.ASTNode value)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

cot in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

coth

public org.sbml.jsbml.util.compilers.ASTNodeValue coth(org.sbml.jsbml.ASTNode value)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

coth in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

csc

public org.sbml.jsbml.util.compilers.ASTNodeValue csc(org.sbml.jsbml.ASTNode value)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

csc in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

csch

public org.sbml.jsbml.util.compilers.ASTNodeValue csch(org.sbml.jsbml.ASTNode value)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

csch in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

delay

public org.sbml.jsbml.util.compilers.ASTNodeValue delay(java.lang.String delayName,
                                                        org.sbml.jsbml.ASTNode x,
                                                        org.sbml.jsbml.ASTNode delay,
                                                        java.lang.String timeUnits)
                                                 throws org.sbml.jsbml.SBMLException

Specified by:

delay in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

eq

public org.sbml.jsbml.util.compilers.ASTNodeValue eq(org.sbml.jsbml.ASTNode left,
                                                     org.sbml.jsbml.ASTNode right)
                                              throws org.sbml.jsbml.SBMLException

Specified by:

eq in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

exp

public org.sbml.jsbml.util.compilers.ASTNodeValue exp(org.sbml.jsbml.ASTNode value)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

exp in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

factorial

public org.sbml.jsbml.util.compilers.ASTNodeValue factorial(org.sbml.jsbml.ASTNode value)
                                                     throws org.sbml.jsbml.SBMLException

Specified by:

factorial in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

floor

public org.sbml.jsbml.util.compilers.ASTNodeValue floor(org.sbml.jsbml.ASTNode value)
                                                 throws org.sbml.jsbml.SBMLException

Specified by:

floor in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

frac

public org.sbml.jsbml.util.compilers.ASTNodeValue frac(org.sbml.jsbml.ASTNode numerator,
                                                       org.sbml.jsbml.ASTNode denominator)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

frac in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

frac

public org.sbml.jsbml.util.compilers.ASTNodeValue frac(int numerator,
                                                       int denominator)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

frac in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

function

public org.sbml.jsbml.util.compilers.ASTNodeValue function(org.sbml.jsbml.FunctionDefinition functionDefinition,
                                                           java.util.List<org.sbml.jsbml.ASTNode> args)
                                                    throws org.sbml.jsbml.SBMLException

Specified by:

function in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

function

public org.sbml.jsbml.util.compilers.ASTNodeValue function(java.lang.String functionDefinitionName,
                                                           java.util.List<org.sbml.jsbml.ASTNode> args)
                                                    throws org.sbml.jsbml.SBMLException

Specified by:

function in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

functionCsymbol

public org.sbml.jsbml.util.compilers.ASTNodeValue functionCsymbol(org.sbml.jsbml.ASTNode csymbol)
                                                           throws org.sbml.jsbml.SBMLException

Specified by:

functionCsymbol in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

geq

public org.sbml.jsbml.util.compilers.ASTNodeValue geq(org.sbml.jsbml.ASTNode left,
                                                      org.sbml.jsbml.ASTNode right)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

geq in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

getConstantAvogadro

public org.sbml.jsbml.util.compilers.ASTNodeValue getConstantAvogadro(java.lang.String name)

Specified by:

getConstantAvogadro in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

getConstantE

public org.sbml.jsbml.util.compilers.ASTNodeValue getConstantE()

Specified by:

getConstantE in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

getConstantFalse

public org.sbml.jsbml.util.compilers.ASTNodeValue getConstantFalse()

Specified by:

getConstantFalse in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

getConstantPi

public org.sbml.jsbml.util.compilers.ASTNodeValue getConstantPi()

Specified by:

getConstantPi in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

getConstantTrue

public org.sbml.jsbml.util.compilers.ASTNodeValue getConstantTrue()

Specified by:

getConstantTrue in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

getNegativeInfinity

public org.sbml.jsbml.util.compilers.ASTNodeValue getNegativeInfinity()
                                                               throws org.sbml.jsbml.SBMLException

Specified by:

getNegativeInfinity in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

getPositiveInfinity

public org.sbml.jsbml.util.compilers.ASTNodeValue getPositiveInfinity()

Specified by:

getPositiveInfinity in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

gt

public org.sbml.jsbml.util.compilers.ASTNodeValue gt(org.sbml.jsbml.ASTNode left,
                                                     org.sbml.jsbml.ASTNode right)
                                              throws org.sbml.jsbml.SBMLException

Specified by:

gt in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

lambda

public org.sbml.jsbml.util.compilers.ASTNodeValue lambda(java.util.List<org.sbml.jsbml.ASTNode> values)
                                                  throws org.sbml.jsbml.SBMLException

Specified by:

lambda in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

leq

public org.sbml.jsbml.util.compilers.ASTNodeValue leq(org.sbml.jsbml.ASTNode left,
                                                      org.sbml.jsbml.ASTNode right)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

leq in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

ln

public org.sbml.jsbml.util.compilers.ASTNodeValue ln(org.sbml.jsbml.ASTNode value)
                                              throws org.sbml.jsbml.SBMLException

Specified by:

ln in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

log

public org.sbml.jsbml.util.compilers.ASTNodeValue log(org.sbml.jsbml.ASTNode value)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

log in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

log

public org.sbml.jsbml.util.compilers.ASTNodeValue log(org.sbml.jsbml.ASTNode base,
                                                      org.sbml.jsbml.ASTNode value)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

log in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

lt

public org.sbml.jsbml.util.compilers.ASTNodeValue lt(org.sbml.jsbml.ASTNode left,
                                                     org.sbml.jsbml.ASTNode right)
                                              throws org.sbml.jsbml.SBMLException

Specified by:

lt in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

minus

public org.sbml.jsbml.util.compilers.ASTNodeValue minus(java.util.List<org.sbml.jsbml.ASTNode> values)
                                                 throws org.sbml.jsbml.SBMLException

Specified by:

minus in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

neq

public org.sbml.jsbml.util.compilers.ASTNodeValue neq(org.sbml.jsbml.ASTNode left,
                                                      org.sbml.jsbml.ASTNode right)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

neq in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

not

public org.sbml.jsbml.util.compilers.ASTNodeValue not(org.sbml.jsbml.ASTNode value)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

not in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

or

public org.sbml.jsbml.util.compilers.ASTNodeValue or(java.util.List<org.sbml.jsbml.ASTNode> values)
                                              throws org.sbml.jsbml.SBMLException

Specified by:

or in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

piecewise

public org.sbml.jsbml.util.compilers.ASTNodeValue piecewise(java.util.List<org.sbml.jsbml.ASTNode> values)
                                                     throws org.sbml.jsbml.SBMLException

Specified by:

piecewise in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

plus

public org.sbml.jsbml.util.compilers.ASTNodeValue plus(java.util.List<org.sbml.jsbml.ASTNode> values)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

plus in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

pow

public org.sbml.jsbml.util.compilers.ASTNodeValue pow(org.sbml.jsbml.ASTNode base,
                                                      org.sbml.jsbml.ASTNode exponent)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

pow in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

root

public org.sbml.jsbml.util.compilers.ASTNodeValue root(org.sbml.jsbml.ASTNode rootExponent,
                                                       org.sbml.jsbml.ASTNode radiant)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

root in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

root

public org.sbml.jsbml.util.compilers.ASTNodeValue root(double rootExponent,
                                                       org.sbml.jsbml.ASTNode radiant)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

root in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

sec

public org.sbml.jsbml.util.compilers.ASTNodeValue sec(org.sbml.jsbml.ASTNode value)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

sec in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

sech

public org.sbml.jsbml.util.compilers.ASTNodeValue sech(org.sbml.jsbml.ASTNode value)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

sech in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

selector

public org.sbml.jsbml.util.compilers.ASTNodeValue selector(java.util.List<org.sbml.jsbml.ASTNode> nodes)
                                                    throws org.sbml.jsbml.SBMLException

Specified by:

selector in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

sin

public org.sbml.jsbml.util.compilers.ASTNodeValue sin(org.sbml.jsbml.ASTNode value)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

sin in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

sinh

public org.sbml.jsbml.util.compilers.ASTNodeValue sinh(org.sbml.jsbml.ASTNode value)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

sinh in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

sqrt

public org.sbml.jsbml.util.compilers.ASTNodeValue sqrt(org.sbml.jsbml.ASTNode radiant)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

sqrt in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

symbolTime

public org.sbml.jsbml.util.compilers.ASTNodeValue symbolTime(java.lang.String time)

Specified by:

symbolTime in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

tan

public org.sbml.jsbml.util.compilers.ASTNodeValue tan(org.sbml.jsbml.ASTNode value)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

tan in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

tanh

public org.sbml.jsbml.util.compilers.ASTNodeValue tanh(org.sbml.jsbml.ASTNode value)
                                                throws org.sbml.jsbml.SBMLException

Specified by:

tanh in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

times

public org.sbml.jsbml.util.compilers.ASTNodeValue times(java.util.List<org.sbml.jsbml.ASTNode> values)
                                                 throws org.sbml.jsbml.SBMLException

Specified by:

times in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

uMinus

public org.sbml.jsbml.util.compilers.ASTNodeValue uMinus(org.sbml.jsbml.ASTNode value)
                                                  throws org.sbml.jsbml.SBMLException

Specified by:

uMinus in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

unknownValue

public org.sbml.jsbml.util.compilers.ASTNodeValue unknownValue()
                                                        throws org.sbml.jsbml.SBMLException

Specified by:

unknownValue in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

vector

public org.sbml.jsbml.util.compilers.ASTNodeValue vector(java.util.List<org.sbml.jsbml.ASTNode> nodes)
                                                  throws org.sbml.jsbml.SBMLException

Specified by:

vector in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

xor

public org.sbml.jsbml.util.compilers.ASTNodeValue xor(java.util.List<org.sbml.jsbml.ASTNode> values)
                                               throws org.sbml.jsbml.SBMLException

Specified by:

xor in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Throws:

org.sbml.jsbml.SBMLException

max

public org.sbml.jsbml.util.compilers.ASTNodeValue max(java.util.List<org.sbml.jsbml.ASTNode> values)

Specified by:

max in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

min

public org.sbml.jsbml.util.compilers.ASTNodeValue min(java.util.List<org.sbml.jsbml.ASTNode> values)

Specified by:

min in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

quotient

public org.sbml.jsbml.util.compilers.ASTNodeValue quotient(java.util.List<org.sbml.jsbml.ASTNode> values)

Specified by:

quotient in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

rem

public org.sbml.jsbml.util.compilers.ASTNodeValue rem(java.util.List<org.sbml.jsbml.ASTNode> values)

Specified by:

rem in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

implies

public org.sbml.jsbml.util.compilers.ASTNodeValue implies(java.util.List<org.sbml.jsbml.ASTNode> values)

Specified by:

implies in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

getRateOf

public org.sbml.jsbml.util.compilers.ASTNodeValue getRateOf(org.sbml.jsbml.ASTNode name)

Specified by:

getRateOf in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler