org.sbml.jsbml.ext.distrib.util

Class DistribModelBuilder

java.lang.Object

org.sbml.jsbml.ext.distrib.util.DistribModelBuilder

public class DistribModelBuilder
extends Object

This class provides a collection of convenient methods to create SBML elements related to the distrib package.

Since:

1.0

Version:

$Rev$

Author:

Nicolas Rodriguez

Constructor Summary

Constructors

Constructor and Description
DistribModelBuilder()

Method Summary

Modifier and Type	Method and Description
static void	createDistribution(FunctionDefinition f, String distribution, String[] inputTypes, String[] inputs) Creates the constructs needed for the given distribution in the distrib package.
static void	createRange(SBase sbase, String lower, String upper) Creates the constructs needed for a uncertml Range.
static void	createStatisticsCollection(SBase sbase, String[] inputTypes, String[] inputs, String[] values) Creates the constructs needed for a StatisticsCollection.
static void	createStatisticsCollection(SBase sbase, String[] inputTypes, String[] inputs, String[] values, String[] attributeNames, String[] attributeValues) Creates the constructs needed for a StatisticsCollection.
static void	main(String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DistribModelBuilder

public DistribModelBuilder()

Method Detail

createDistribution

public static void createDistribution(FunctionDefinition f,
                                      String distribution,
                                      String[] inputTypes,
                                      String[] inputs)

Creates the constructs needed for the given distribution in the distrib package.

If any DrawFromDistribution instance was set in the given FunctionDefinition, it will be replaced. First we create a new DrawFromDistribution. Then we create one DistribInput for each String from the inputs array. To finish the UncertML XMLNode is created using the given distribution name, the inputs and inputTypes.

Parameters:

f - a functionDefinition where we will add distrib info

distribution - the name of the UncertML distribution as it will be set in the XML.

inputTypes - the array of input types, used to create the XML child element of the UncertML distribution.

inputs - the array of inputs, used to create the DistribInput id and the 'varId' attribute value for the 'var' UncertML elements.

createRange

public static void createRange(SBase sbase,
                               String lower,
                               String upper)

Creates the constructs needed for a uncertml Range.

If any Uncertainty instance was set in the given SBase, it will be replaced.

Parameters:

sbase - an SBase where we will add uncertainty information

lower - the lower value of the Range

upper - the upper value of the Range

createStatisticsCollection

public static void createStatisticsCollection(SBase sbase,
                                              String[] inputTypes,
                                              String[] inputs,
                                              String[] values)

Creates the constructs needed for a StatisticsCollection.

If any Uncertainty instance was set in the given SBase, it will be replaced.

Parameters:

sbase - an SBase where we will add uncertainty information

inputTypes - the array of input types, used to create the XML child element of the UncertML StatisticsCollection.

inputs - the array of inputs, used to create the child element of the value element

values - the array of statistics values

createStatisticsCollection

public static void createStatisticsCollection(SBase sbase,
                                              String[] inputTypes,
                                              String[] inputs,
                                              String[] values,
                                              String[] attributeNames,
                                              String[] attributeValues)

Creates the constructs needed for a StatisticsCollection.

If any Uncertainty instance was set in the given SBase, it will be replaced.

Parameters:

sbase - an SBase where we will add uncertainty information

inputTypes - the array of input types, used to create the XML child element of the UncertML StatisticsCollection.

inputs - the array of inputs, used to create the child element of the value element

values - the array of statistics values

attributeNames - the array of attributes, one per inputs.

attributeValues - the array of attribute values, one per inputs.

main

public static void main(String[] args)
                 throws SBMLException,
                        XMLStreamException

Parameters:

args -

Throws:

SBMLException

XMLStreamException