org.sbml.jsbml.ext.dyn

Class DynEventPlugin

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.ext.AbstractSBasePlugin

org.sbml.jsbml.ext.dyn.DynSBasePlugin

org.sbml.jsbml.ext.dyn.DynEventPlugin

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, SBasePlugin, TreeNodeWithChangeSupport

public class DynEventPlugin
extends DynSBasePlugin

Since:

1.0

Author:

Harold Gómez

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected ListOf<DynElement>	listOfDynElements List of model components affected by the dynEvent

Fields inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

elementNamespace, extendedSBase, packageVersion

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle

Constructor Summary

Constructors

Constructor and Description
DynEventPlugin() Empty constructor
DynEventPlugin(DynEventPlugin dynEventPlugin) Constructor
DynEventPlugin(Event event) Constructor

Method Summary

Modifier and Type	Method and Description
boolean	addDynElement(DynElement dynElement) Adds a new DynElement to the listOfDynElements.
DynEventPlugin	clone()
DynElement	createDynElement() Creates a new DynElement element and adds it to the listOfDynElements list
DynElement	createDynElement(String id) Creates a new DynElement element and adds it to the getListOfDynElements().
boolean	equals(Object obj)
boolean	getAllowsChildren()
boolean	getApplyToAll() Returns the value of applyToAll
TreeNode	getChildAt(int childIndex)
int	getChildCount()
ListOf<DynElement>	getListOfDynElements() Returns the value of listOfDynElements
int	hashCode()
void	initDefaults() Initializes custom Class attributes
boolean	isApplyToAll()
boolean	isSetApplyToAll() Returns whether applyToAll is set
boolean	isSetListOfDynElements() Returns whether listOfDynElements is set
boolean	readAttribute(String attributeName, String prefix, String value)
boolean	removeDynElement(DynElement dynElement) Removes an element from the listOfDynElements
void	removeDynElement(int i) Removes the ith element from the listOfDynElements
void	setApplyToAll(boolean applyToAll) Sets the value of applyToAll
void	setListOfDynElements(ListOf<DynElement> listOfDynElements) Sets the value of listOfDynElements
boolean	unsetApplyToAll() Unsets the applyToAll field
boolean	unsetListOfDynElements() Unsets the variable listOfDynElements
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.ext.dyn.DynSBasePlugin

getCBOTerm, getPackageName, getParent, getParentSBMLObject, getPrefix, getURI, isSetCBOTerm, setCBOTerm, unsetCBOTerm

Methods inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getElementNamespace, getExtendedSBase, getLevel, getPackageVersion, getSBMLDocument, getVersion, isSetExtendedSBase, isSetPackageVersion, removeFromParent, setExtendedSBase, setNamespace, setPackageVersion

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isCloningInProgress, isInvalidSBMLAllowed, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, notifyChildChange, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, toString, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, isLeaf

Field Detail

listOfDynElements

protected ListOf<DynElement> listOfDynElements

List of model components affected by the dynEvent

Constructor Detail

DynEventPlugin

public DynEventPlugin()

Empty constructor

DynEventPlugin

public DynEventPlugin(Event event)

Constructor

Parameters:

event -

DynEventPlugin

public DynEventPlugin(DynEventPlugin dynEventPlugin)

Constructor

Parameters:

dynEventPlugin -

Method Detail

initDefaults

public void initDefaults()

Description copied from class: DynSBasePlugin

Initializes custom Class attributes

Overrides:

initDefaults in class DynSBasePlugin

isApplyToAll

public boolean isApplyToAll()

Returns:

applyToAll

getApplyToAll

public boolean getApplyToAll()

Returns the value of applyToAll

Returns:

the value of applyToAll

isSetApplyToAll

public boolean isSetApplyToAll()

Returns whether applyToAll is set

Returns:

whether applyToAll is set

setApplyToAll

public void setApplyToAll(boolean applyToAll)

Sets the value of applyToAll

Parameters:

applyToAll -

unsetApplyToAll

public boolean unsetApplyToAll()

Unsets the applyToAll field

Returns:

true, if applyToAll was set before, otherwise false

getListOfDynElements

public ListOf<DynElement> getListOfDynElements()

Returns the value of listOfDynElements

Returns:

the value of listOfDynElements

isSetListOfDynElements

public boolean isSetListOfDynElements()

Returns whether listOfDynElements is set

Returns:

whether listOfDynElements is set

setListOfDynElements

public void setListOfDynElements(ListOf<DynElement> listOfDynElements)

Sets the value of listOfDynElements

Parameters:

listOfDynElements -

unsetListOfDynElements

public boolean unsetListOfDynElements()

Unsets the variable listOfDynElements

Returns:

true, if listOfDynElements was set before, otherwise false

createDynElement

public DynElement createDynElement()

Creates a new DynElement element and adds it to the listOfDynElements list

Returns:

createDynElement

public DynElement createDynElement(String id)

Creates a new DynElement element and adds it to the getListOfDynElements().

Parameters:

id -

Returns:

a new DynElement element

addDynElement

public boolean addDynElement(DynElement dynElement)

Adds a new DynElement to the listOfDynElements. The listOfDynElements is initialized if necessary.

Parameters:

dynElement - the element to add to the list

Returns:

true (as specified by Collection#add)

removeDynElement

public void removeDynElement(int i)

Removes the ith element from the listOfDynElements

Parameters:

i -

removeDynElement

public boolean removeDynElement(DynElement dynElement)

Removes an element from the listOfDynElements

Parameters:

dynElement - the element to be removed from the list

Returns:

true if the list contained the specified element

See Also:

List#remove(Object)

getAllowsChildren

public boolean getAllowsChildren()

Specified by:

getAllowsChildren in interface TreeNode

Overrides:

getAllowsChildren in class DynSBasePlugin

getChildAt

public TreeNode getChildAt(int childIndex)

Specified by:

getChildAt in interface TreeNode

Overrides:

getChildAt in class DynSBasePlugin

getChildCount

public int getChildCount()

Specified by:

getChildCount in interface TreeNode

Overrides:

getChildCount in class DynSBasePlugin

equals

public boolean equals(Object obj)

Specified by:

equals in interface SBasePlugin

Overrides:

equals in class DynSBasePlugin

hashCode

public int hashCode()

Specified by:

hashCode in interface SBasePlugin

Overrides:

hashCode in class DynSBasePlugin

clone

public DynEventPlugin clone()

Specified by:

clone in interface SBasePlugin

Overrides:

clone in class DynSBasePlugin

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface SBasePlugin

Overrides:

writeXMLAttributes in class DynSBasePlugin

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface SBasePlugin

Overrides:

readAttribute in class DynSBasePlugin