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A

activeObjective - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 
addFluxBound(FluxBound) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Adds a new FluxBound to the listOfFluxBounds.
addFluxObjective(FluxObjective) - Method in class org.sbml.jsbml.ext.fbc.Objective
Adds a new FluxObjective to the listOfFluxObjectives.
addObjective(Objective) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Adds a new Objective to the listOfObjectives.

C

charge - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 
chemicalFormula - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 
clone() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
clone() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
clone() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
 
clone() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
clones this class
clone() - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives
 
clone() - Method in class org.sbml.jsbml.ext.fbc.Objective
 
coefficient - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 
createFluxBound() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Creates a new FluxBound element and adds it to the ListOfFluxBounds list
createFluxBound(String) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Creates a new FluxBound element and adds it to the ListOfFluxBounds list
createFluxObjective() - Method in class org.sbml.jsbml.ext.fbc.Objective
Creates a new FluxObjective element and adds it to the ListOfFluxObjectives list
createFluxObjective(String) - Method in class org.sbml.jsbml.ext.fbc.Objective
Creates a new FluxObjective element and adds it to the ListOfFluxObjectives list
createFluxObjective(String, String) - Method in class org.sbml.jsbml.ext.fbc.Objective
 
createObjective() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Creates a new Objective element and adds it to the ListOfObjectives list
createObjective(String) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Creates a new Objective element and adds it to the ListOfObjectives list
createPluginFor(SBase) - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 

E

equals(Object) - Method in class org.sbml.jsbml.ext.fbc.FluxBound
 
equals(Object) - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
 
equals(Object) - Method in class org.sbml.jsbml.ext.fbc.Objective
 

F

FBCConstants - Class in org.sbml.jsbml.ext.fbc
Contains constants related to the FBC package.
FBCConstants() - Constructor for class org.sbml.jsbml.ext.fbc.FBCConstants
 
FBCList - Enum in org.sbml.jsbml.ext.fbc
Lists used in the FBC package.
FBCModelPlugin - Class in org.sbml.jsbml.ext.fbc
FBCModelPlugin is the extended Model class for the FBC package.
FBCModelPlugin(FBCModelPlugin) - Constructor for class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Clone constructor
FBCModelPlugin(Model) - Constructor for class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
FBCParser - Class in org.sbml.jsbml.xml.parsers
This class is used to parse the fbc extension package elements and attributes.
FBCParser() - Constructor for class org.sbml.jsbml.xml.parsers.FBCParser
 
FBCSpeciesPlugin - Class in org.sbml.jsbml.ext.fbc
FBCSpeciesPlugin is the extended Species class with the additional attributes charge and chemicalFormula
FBCSpeciesPlugin(FBCSpeciesPlugin) - Constructor for class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
Clone constructor
FBCSpeciesPlugin(Species) - Constructor for class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
Creates an FBCSpeciesPlugin instance
FluxBound - Class in org.sbml.jsbml.ext.fbc
FluxBound is a new FBC class which holds a single (in)equality that provides the maximum or minimum value that a reaction flux can obtain at steady state.
FluxBound() - Constructor for class org.sbml.jsbml.ext.fbc.FluxBound
Creates an instance of FluxBound.
FluxBound(FluxBound) - Constructor for class org.sbml.jsbml.ext.fbc.FluxBound
 
FluxBound(int, int) - Constructor for class org.sbml.jsbml.ext.fbc.FluxBound
Creates a FluxBound instance with a level and version.
FluxBound(String) - Constructor for class org.sbml.jsbml.ext.fbc.FluxBound
Creates a FluxBound instance with an id.
FluxBound(String, int, int) - Constructor for class org.sbml.jsbml.ext.fbc.FluxBound
Creates a FluxBound instance with an id, level, and version.
FluxBound(String, String, int, int) - Constructor for class org.sbml.jsbml.ext.fbc.FluxBound
Creates a FluxBound instance with an id, name, level, and version.
FluxBound.Operation - Enum in org.sbml.jsbml.ext.fbc
Allowable operations for flux bounds.
FluxObjective - Class in org.sbml.jsbml.ext.fbc
The FluxObjective class is a relatively simple container for a model variable weighted by a signed linear coefficient.
FluxObjective() - Constructor for class org.sbml.jsbml.ext.fbc.FluxObjective
Creates an FluxObjective instance
FluxObjective(int, int) - Constructor for class org.sbml.jsbml.ext.fbc.FluxObjective
Creates a FluxObjective instance with a level and version.
FluxObjective(String) - Constructor for class org.sbml.jsbml.ext.fbc.FluxObjective
Creates a FluxObjective instance with an id.
FluxObjective(String, int, int) - Constructor for class org.sbml.jsbml.ext.fbc.FluxObjective
Creates a FluxObjective instance with an id, level, and version.
FluxObjective(String, String, int, int) - Constructor for class org.sbml.jsbml.ext.fbc.FluxObjective
Creates a FluxObjective instance with an id, name, level, and version.
FluxObjective(FluxObjective) - Constructor for class org.sbml.jsbml.ext.fbc.FluxObjective
Clone constructor
fromString(String) - Static method in enum org.sbml.jsbml.ext.fbc.FluxBound.Operation
 
fromString(String) - Static method in enum org.sbml.jsbml.ext.fbc.Objective.Type
 

G

getActiveObjective() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Gets the activeObjective.
getActiveObjective() - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives
Returns the value of activeObjective
getAllowsChildren() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
getAllowsChildren() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
getCharge() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
Returns the value of charge
getChemicalFormula() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
Returns the value of chemicalFormula
getChildAt(int) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
getChildAt(int) - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
getChildAt(int) - Method in class org.sbml.jsbml.ext.fbc.Objective
 
getChildCount() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
getChildCount() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
getChildCount() - Method in class org.sbml.jsbml.ext.fbc.Objective
 
getCoefficient() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
Returns the value of coefficient
getElementName() - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives
 
getElementNamespace() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
getElementNamespace() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
getFluxBound(int) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Gets an element from the listOfFluxBounds at the given index.
getFluxBoundCount() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Return the number of FluxBound in this FBCModelPlugin.
getListOfFluxBounds() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Returns the listOfFluxBounds.
getListOfFluxObjectives() - Method in class org.sbml.jsbml.ext.fbc.Objective
Returns the listOfFluxObjectives
getListOfObjectives() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
getListOfSBMLElementsToWrite(Object) - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 
getNamespaceFor(int, int, int) - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 
getNamespaces() - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 
getNamespaceURI(int, int) - Static method in class org.sbml.jsbml.ext.fbc.FBCConstants
 
getNamespaceURI() - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 
getNumFluxBound() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Return the number of FluxBound in this FBCModelPlugin.
getNumObjective() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Return the number of FluxBound in this FBCModelPlugin.
getObjective(int) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Gets an element from the listOfObjectives at the given index.
getObjectiveCount() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Return the number of Objective in this FBCModelPlugin.
getOperation() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
Returns the operation
getPackageName() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
getPackageName() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
getPackageName() - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 
getPackageNamespaces() - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 
getParent() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
getParent() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
getParentSBMLObject() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
getParentSBMLObject() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
getPrefix() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
getPrefix() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
getReaction() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
Returns the reaction id
getReaction() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
Returns the value of reaction
getShortLabel() - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 
getType() - Method in class org.sbml.jsbml.ext.fbc.Objective
Returns the type.
getURI() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
getURI() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
getValue() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
Returns the value

H

hashCode() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
 
hashCode() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
 
hashCode() - Method in class org.sbml.jsbml.ext.fbc.Objective
 

I

initDefaults() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
Initializes the default values.
initDefaults() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
Initializes the default values using the namespace.
initDefaults() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
Initializes the default values using the namespace.
initDefaults() - Method in class org.sbml.jsbml.ext.fbc.Objective
Initializes the default values using the namespace.
isIdMandatory() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
 
isIdMandatory() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
 
isIdMandatory() - Method in class org.sbml.jsbml.ext.fbc.Objective
 
isRequired() - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 
isSetActiveObjective() - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives
Returns whether activeObjective is set
isSetCharge() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
Returns whether charge is set
isSetChemicalFormula() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
Returns whether chemicalFormula is set
isSetCoefficient() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
Returns whether coefficient is set
isSetListOfFluxBounds() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Returns true if listOfFluxBounds contains at least one element.
isSetListOfFluxObjectives() - Method in class org.sbml.jsbml.ext.fbc.Objective
 
isSetListOfObjectives() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Returns true if listOfObjectives is not null.
isSetOperation() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
Returns whether operation is set
isSetReaction() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
Returns whether reaction is set
isSetReaction() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
Returns whether reaction is set
isSetType() - Method in class org.sbml.jsbml.ext.fbc.Objective
Returns whether type is set
isSetValue() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
 

L

listOfObjectives - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 
ListOfObjectives - Class in org.sbml.jsbml.ext.fbc
Unlike other SBML ListOf classes, ListOfObjectives adds an additional required attribute activeObjective.
ListOfObjectives() - Constructor for class org.sbml.jsbml.ext.fbc.ListOfObjectives
 
ListOfObjectives(int, int) - Constructor for class org.sbml.jsbml.ext.fbc.ListOfObjectives
 
ListOfObjectives(ListOfObjectives) - Constructor for class org.sbml.jsbml.ext.fbc.ListOfObjectives
 
ListOfObjectives(ListOf<Objective>) - Constructor for class org.sbml.jsbml.ext.fbc.ListOfObjectives
 

M

main(String[]) - Static method in class org.sbml.jsbml.xml.parsers.FBCParser
Tests this class
MIN_SBML_LEVEL - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 
MIN_SBML_VERSION - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 

N

namespaces - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 
namespaceURI - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
The latest namespace URI of this parser, this value can change between releases.
namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
The namespace URI of this parser for SBML level 3, version 1 and package version 1.

O

Objective - Class in org.sbml.jsbml.ext.fbc
An integral component in a complete description of a steady-state model is the so-called 'objective function' which generally consists of a linear combination of model variables (fluxes) and a sense (direction).
Objective() - Constructor for class org.sbml.jsbml.ext.fbc.Objective
Creates an Objective instance
Objective(int, int) - Constructor for class org.sbml.jsbml.ext.fbc.Objective
Creates a Objective instance with a level and version.
Objective(Objective) - Constructor for class org.sbml.jsbml.ext.fbc.Objective
Clone constructor
Objective(String) - Constructor for class org.sbml.jsbml.ext.fbc.Objective
Creates a Objective instance with an id.
Objective(String, int, int) - Constructor for class org.sbml.jsbml.ext.fbc.Objective
Creates a Objective instance with an id, level, and version.
Objective(String, String, int, int) - Constructor for class org.sbml.jsbml.ext.fbc.Objective
Creates a Objective instance with an id, name, level, and version.
Objective.Type - Enum in org.sbml.jsbml.ext.fbc
 
operation - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 
org.sbml.jsbml.ext.fbc - package org.sbml.jsbml.ext.fbc
Provides classes for the Flux Balance Constraints package (FBC).
org.sbml.jsbml.xml.parsers - package org.sbml.jsbml.xml.parsers
 

P

packageName - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 
processAttribute(String, String, String, String, String, boolean, Object) - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 
processEndElement(String, String, boolean, Object) - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 
processStartElement(String, String, String, boolean, boolean, Object) - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 

R

reaction - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.FluxBound
 
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
 
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives
 
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.Objective
 
removeFluxBound(FluxBound) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Removes an element from the listOfFluxBounds.
removeFluxBound(int) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Removes an element from the listOfFluxBounds at the given index.
removeFluxObjective(FluxObjective) - Method in class org.sbml.jsbml.ext.fbc.Objective
Removes an element from the listOfFluxObjectives.
removeFluxObjective(int) - Method in class org.sbml.jsbml.ext.fbc.Objective
Removes an element from the listOfFluxObjectives at the given index.
removeFluxObjective(String) - Method in class org.sbml.jsbml.ext.fbc.Objective
Removes an element from the listOfFluxObjectives with the given id.
removeObjective(int) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Removes an element from the listOfObjectives at the given index.
removeObjective(Objective) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Removes an element from the listOfObjectives.

S

setActiveObjective(String) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
The activeObjective refers to the id of an existing objective.
setActiveObjective(Objective) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
setActiveObjective(String) - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives
This attribute refers to an id of an existing Objective.
setCharge(int) - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
Sets the value of charge.
setChemicalFormula(String) - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
Sets the value of chemicalFormula.
setCoefficient(double) - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
The coefficient attribute takes the value of the coefficient that the FluxObjective takes in the context of the enclosing Objective class.
setListOfFluxBounds(ListOf<FluxBound>) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Sets the given ListOf<FluxBound>.
setListOfFluxObjectives(ListOf<FluxObjective>) - Method in class org.sbml.jsbml.ext.fbc.Objective
This list houses the actual fluxes to partake in this objective function, which are encoded by FluxObjective Sets the given ListOf<FluxObjective>.
setListOfObjectives(ListOfObjectives) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Sets the given ListOfObjectives.
setListOfObjectives(ListOf<Objective>) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Sets the given ListOf<Objective>.
setNotesKeyToUserObject(String) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
setOperation(FluxBound.Operation) - Method in class org.sbml.jsbml.ext.fbc.FluxBound
 
setReaction(Reaction) - Method in class org.sbml.jsbml.ext.fbc.FluxBound
 
setReaction(String) - Method in class org.sbml.jsbml.ext.fbc.FluxBound
Sets the the reaction id
setReaction(Reaction) - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
 
setReaction(String) - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
Sets the reaction that thie FluxObjective is associated with in the context of the enclosing Objective class.
setType(String) - Method in class org.sbml.jsbml.ext.fbc.Objective
The required type attribute contains a Objective.Type which represents the sense of the optimality constraint and can take one of two values, minimize or maximize.
setType(Objective.Type) - Method in class org.sbml.jsbml.ext.fbc.Objective
Sets the value of type
setValue(double) - Method in class org.sbml.jsbml.ext.fbc.FluxBound
 
shortLabel - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 

T

toString() - Method in enum org.sbml.jsbml.ext.fbc.FluxBound.Operation
 
toString() - Method in enum org.sbml.jsbml.ext.fbc.Objective.Type
 
type - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 

U

unsetActiveObjective() - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives
Unsets the variable activeObjective
unsetCharge() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
Unsets the variable charge
unsetChemicalFormula() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
Unsets the variable chemicalFormula
unsetCoefficient() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
Unsets the variable coefficient
unsetListOfFluxBounds() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Returns true if FBCModelPlugin.listOfFluxBounds contain at least one element, otherwise false
unsetListOfFluxObjectives() - Method in class org.sbml.jsbml.ext.fbc.Objective
Unsets the listOfFluxObjectives.
unsetListOfObjectives() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
Returns true if listOfObjectives contain at least one element, otherwise false
unsetOperation() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
Unsets the variable operation
unsetReaction() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
Unsets the variable reaction
unsetReaction() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
Unsets the variable reaction
unsetType() - Method in class org.sbml.jsbml.ext.fbc.Objective
Unsets the variable type
unsetValue() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
Unsets the variable value

V

value - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
 
valueOf(String) - Static method in enum org.sbml.jsbml.ext.fbc.FBCList
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.sbml.jsbml.ext.fbc.FluxBound.Operation
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.sbml.jsbml.ext.fbc.Objective.Type
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.sbml.jsbml.ext.fbc.FBCList
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.sbml.jsbml.ext.fbc.FluxBound.Operation
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.sbml.jsbml.ext.fbc.Objective.Type
Returns an array containing the constants of this enum type, in the order they are declared.

W

writeElement(SBMLObjectForXML, Object) - Method in class org.sbml.jsbml.xml.parsers.FBCParser
 
writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
 
writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
 
writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.FluxBound
 
writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
 
writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives
 
writeXMLAttributes() - Method in class org.sbml.jsbml.ext.fbc.Objective
 
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