Package org.sbml.jsbml.ext.fbc

Provides classes for the Flux Balance Constraints package (FBC).

See: Description

Class Summary

Class	Description
FBCConstants	Contains constants related to the FBC package.
FBCModelPlugin	FBCModelPlugin is the extended Model class for the FBC package.
FBCSpeciesPlugin	FBCSpeciesPlugin is the extended Species class with the additional attributes charge and chemicalFormula
FluxBound	FluxBound is a new FBC class which holds a single (in)equality that provides the maximum or minimum value that a reaction flux can obtain at steady state.
FluxObjective	The FluxObjective class is a relatively simple container for a model variable weighted by a signed linear coefficient.
ListOfObjectives	Unlike other SBML ListOf classes, ListOfObjectives adds an additional required attribute activeObjective.
Objective	An integral component in a complete description of a steady-state model is the so-called 'objective function' which generally consists of a linear combination of model variables (fluxes) and a sense (direction).

Enum Summary

Enum	Description
FBCList	Lists used in the FBC package.
FluxBound.Operation	Allowable operations for flux bounds.
Objective.Type

Package org.sbml.jsbml.ext.fbc Description

Provides classes for the Flux Balance Constraints package (FBC).

The current JSBML implementation of this package follow the FBC version 1 release 1 specifications.

Since:

1.0

Version:

$Rev$

Author:

Nicolas Rodriguez