org.sbml.jsbml.ext.fbc

Class GeneProduct

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.AbstractNamedSBase

org.sbml.jsbml.ext.fbc.GeneProduct

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, org.sbml.jsbml.NamedSBase, org.sbml.jsbml.SBase, org.sbml.jsbml.UniqueNamedSBase, org.sbml.jsbml.util.TreeNodeWithChangeSupport

public class GeneProduct
extends org.sbml.jsbml.AbstractNamedSBase
implements org.sbml.jsbml.UniqueNamedSBase

Introduced to FBC in version 2.

Since:

1.1

Version:

$Rev$

Author:

Andreas Dräger

See Also:

Serialized Form

Last modified:

06.03.2015

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS

Constructor Summary

Constructors

Constructor and Description
GeneProduct()
GeneProduct(GeneProduct nsb)
GeneProduct(int level, int version)
GeneProduct(String id)
GeneProduct(String id, int level, int version)
GeneProduct(String id, String name, int level, int version)

Method Summary

Modifier and Type	Method and Description
GeneProduct	clone()
boolean	equals(Object obj)
String	getAssociatedSpecies() Returns the value of associatedSpecies.
String	getLabel() Returns the value of label
int	hashCode()
void	initDefaults() Initializes the default values using the namespace.
boolean	isIdMandatory()
boolean	isSetAssociatedSpecies() Returns whether associatedSpecies is set.
boolean	isSetLabel() Returns whether label is set
boolean	readAttribute(String attributeName, String prefix, String value)
void	setAssociatedSpecies(String associatedSpecies) Sets the value of associatedSpecies
void	setLabel(String label) Sets the value of label
String	toString()
boolean	unsetAssociatedSpecies() Unsets the variable associatedSpecies.
boolean	unsetLabel() Unsets the variable label
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.AbstractNamedSBase

getId, getName, isSetId, isSetName, isValidId, setId, setName, unsetId, unsetName

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAllowsChildren, getAnnotation, getAnnotationString, getChildAt, getChildCount, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.NamedSBase

getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName

Methods inherited from interface org.sbml.jsbml.SBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeTreeNodeChangeListener, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getAllowsChildren, getChildAt, getChildCount, getIndex, getParent, isLeaf

Constructor Detail

GeneProduct

public GeneProduct()

GeneProduct

public GeneProduct(GeneProduct nsb)

Parameters:

nsb -

GeneProduct

public GeneProduct(int level,
                   int version)

Parameters:

level -

version -

GeneProduct

public GeneProduct(String id)

Parameters:

id -

GeneProduct

public GeneProduct(String id,
                   int level,
                   int version)

Parameters:

id -

level -

version -

GeneProduct

public GeneProduct(String id,
                   String name,
                   int level,
                   int version)

Parameters:

id -

name -

level -

version -

Method Detail

getAssociatedSpecies

public String getAssociatedSpecies()

Returns the value of associatedSpecies.

Returns:

the value of associatedSpecies.

isSetAssociatedSpecies

public boolean isSetAssociatedSpecies()

Returns whether associatedSpecies is set.

Returns:

whether associatedSpecies is set.

setAssociatedSpecies

public void setAssociatedSpecies(String associatedSpecies)

Sets the value of associatedSpecies

Parameters:

associatedSpecies - the value of associatedSpecies to be set.

unsetAssociatedSpecies

public boolean unsetAssociatedSpecies()

Unsets the variable associatedSpecies.

Returns:

true if associatedSpecies was set before, otherwise false.

clone

public GeneProduct clone()

Specified by:

clone in interface org.sbml.jsbml.SBase

Overrides:

clone in class org.sbml.jsbml.AbstractSBase

initDefaults

public void initDefaults()

Initializes the default values using the namespace.

equals

public boolean equals(Object obj)

Specified by:

equals in interface org.sbml.jsbml.SBase

Overrides:

equals in class org.sbml.jsbml.AbstractNamedSBase

getLabel

public String getLabel()

Returns the value of label

Returns:

the value of label

hashCode

public int hashCode()

Specified by:

hashCode in interface org.sbml.jsbml.SBase

Overrides:

hashCode in class org.sbml.jsbml.AbstractNamedSBase

isIdMandatory

public boolean isIdMandatory()

Specified by:

isIdMandatory in interface org.sbml.jsbml.NamedSBase

isSetLabel

public boolean isSetLabel()

Returns whether label is set

Returns:

whether label is set

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface org.sbml.jsbml.SBase

Overrides:

readAttribute in class org.sbml.jsbml.AbstractNamedSBase

setLabel

public void setLabel(String label)

Sets the value of label

Parameters:

label -

toString

public String toString()

Overrides:

toString in class org.sbml.jsbml.AbstractNamedSBase

unsetLabel

public boolean unsetLabel()

Unsets the variable label

Returns:

true, if label was set before, otherwise false

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface org.sbml.jsbml.SBase

Overrides:

writeXMLAttributes in class org.sbml.jsbml.AbstractNamedSBase