org.sbml.jsbml.ext.fbc

Class GeneProductRef

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.AbstractNamedSBase

org.sbml.jsbml.ext.fbc.GeneProductRef

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, Association, org.sbml.jsbml.NamedSBase, org.sbml.jsbml.SBase, org.sbml.jsbml.UniqueNamedSBase, org.sbml.jsbml.util.TreeNodeWithChangeSupport

public class GeneProductRef
extends org.sbml.jsbml.AbstractNamedSBase
implements Association, org.sbml.jsbml.UniqueNamedSBase

Introduced to FBC in version 2.

Since:

1.1

Version:

$Rev$

Author:

Andreas Dräger

See Also:

Serialized Form

Last modified:

06.03.2015

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS

Constructor Summary

Constructors

Constructor and Description
GeneProductRef()
GeneProductRef(GeneProductRef gpr)
GeneProductRef(int level, int version)
GeneProductRef(String id)
GeneProductRef(String id, int level, int version)
GeneProductRef(String id, String name, int level, int version)

Method Summary

Modifier and Type	Method and Description
GeneProductRef	clone()
boolean	equals(Object obj)
String	getGeneProduct() Returns the value of geneProduct.
int	hashCode()
void	initDefaults() Initializes the default values using the namespace.
boolean	isIdMandatory()
boolean	isSetGeneProduct() Returns whether geneProduct is set.
boolean	readAttribute(String attributeName, String prefix, String value)
void	setGeneProduct(String geneProduct) Sets the value of geneProduct
String	toString()
boolean	unsetGeneProduct() Unsets the variable geneProduct
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.AbstractNamedSBase

getId, getName, isSetId, isSetName, isValidId, setId, setName, unsetId, unsetName

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAllowsChildren, getAnnotation, getAnnotationString, getChildAt, getChildCount, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.NamedSBase

getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName

Methods inherited from interface org.sbml.jsbml.SBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeTreeNodeChangeListener, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getAllowsChildren, getChildAt, getChildCount, getIndex, getParent, isLeaf

Constructor Detail

GeneProductRef

public GeneProductRef()

GeneProductRef

public GeneProductRef(GeneProductRef gpr)

Parameters:

gpr -

GeneProductRef

public GeneProductRef(int level,
                      int version)

Parameters:

level -

version -

GeneProductRef

public GeneProductRef(String id)

Parameters:

id -

GeneProductRef

public GeneProductRef(String id,
                      int level,
                      int version)

Parameters:

id -

level -

version -

GeneProductRef

public GeneProductRef(String id,
                      String name,
                      int level,
                      int version)

Parameters:

id -

name -

level -

version -

Method Detail

clone

public GeneProductRef clone()

Specified by:

clone in interface org.sbml.jsbml.SBase

Overrides:

clone in class org.sbml.jsbml.AbstractSBase

initDefaults

public void initDefaults()

Initializes the default values using the namespace.

equals

public boolean equals(Object obj)

Specified by:

equals in interface org.sbml.jsbml.SBase

Overrides:

equals in class org.sbml.jsbml.AbstractNamedSBase

getGeneProduct

public String getGeneProduct()

Returns the value of geneProduct.

Returns:

the value of geneProduct.

hashCode

public int hashCode()

Specified by:

hashCode in interface org.sbml.jsbml.SBase

Overrides:

hashCode in class org.sbml.jsbml.AbstractNamedSBase

isIdMandatory

public boolean isIdMandatory()

Specified by:

isIdMandatory in interface org.sbml.jsbml.NamedSBase

isSetGeneProduct

public boolean isSetGeneProduct()

Returns whether geneProduct is set.

Returns:

whether geneProduct is set.

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface org.sbml.jsbml.SBase

Overrides:

readAttribute in class org.sbml.jsbml.AbstractNamedSBase

setGeneProduct

public void setGeneProduct(String geneProduct)

Sets the value of geneProduct

Parameters:

geneProduct -

toString

public String toString()

Overrides:

toString in class org.sbml.jsbml.AbstractNamedSBase

unsetGeneProduct

public boolean unsetGeneProduct()

Unsets the variable geneProduct

Returns:

true, if geneProduct was set before, otherwise false

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface org.sbml.jsbml.SBase

Overrides:

writeXMLAttributes in class org.sbml.jsbml.AbstractNamedSBase