Serialized Form

Package org.sbml.jsbml.ext.fbc

Class org.sbml.jsbml.ext.fbc.AbstractFBCSBasePlugin extends org.sbml.jsbml.ext.AbstractSBasePlugin implements Serializable

serialVersionUID:

4959025739069449677L

Class org.sbml.jsbml.ext.fbc.And extends LogicalOperator implements Serializable

serialVersionUID:

5964208695186298385L

Class org.sbml.jsbml.ext.fbc.FBCModelPlugin extends AbstractFBCSBasePlugin implements Serializable

serialVersionUID:

-7451190347195219863L

Serialized Fields

listOfFluxBounds

org.sbml.jsbml.ListOf<T extends org.sbml.jsbml.SBase> listOfFluxBounds

Deprecated. Only defined in FBC version 1.

listOfGeneProducts

org.sbml.jsbml.ListOf<T extends org.sbml.jsbml.SBase> listOfGeneProducts

Introduced to FBC in version 2.

listOfObjectives

ListOfObjectives listOfObjectives

strict

Boolean strict

The mandatory attribute strict is used to apply an additional set of restrictions to the model. The strict attribute ensures that the Flux Balance Constraints package can be used to encode legacy FBA models expressible as Linear Programs (LP's) with software that is unable to analyze arbitrary mathematical expressions.

Class org.sbml.jsbml.ext.fbc.FBCReactionPlugin extends AbstractFBCSBasePlugin implements Serializable

serialVersionUID:

8382172559018633373L

Serialized Fields

geneProductAssociation

GeneProductAssociation geneProductAssociation

lowerFluxBound

String lowerFluxBound

A reference to a global parameter in the model for the lower bound of the reaction.

upperFluxBound

String upperFluxBound

A reference to a global parameter in the model for the upper bound of the reaction.

Class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin extends AbstractFBCSBasePlugin implements Serializable

serialVersionUID:

923773407400143272L

Serialized Fields

charge

int charge

chemicalFormula

String chemicalFormula

isSetCharge

boolean isSetCharge

Class org.sbml.jsbml.ext.fbc.FluxBound extends org.sbml.jsbml.AbstractNamedSBase implements Serializable

serialVersionUID:

-8885319163985464653L

Serialized Fields

isSetValue

boolean isSetValue

Deprecated.

operation

FluxBound.Operation operation

Deprecated.

reaction

String reaction

Deprecated.

value

Double value

Deprecated.

Class org.sbml.jsbml.ext.fbc.FluxObjective extends org.sbml.jsbml.AbstractNamedSBase implements Serializable

serialVersionUID:

246449689493121713L

Serialized Fields

coefficient

double coefficient

isSetCoefficient

boolean isSetCoefficient

reaction

String reaction

Class org.sbml.jsbml.ext.fbc.GeneProduct extends org.sbml.jsbml.AbstractNamedSBase implements Serializable

serialVersionUID:

-6117717488126260095L

Serialized Fields

label

String label

associatedSpecies

String associatedSpecies

Class org.sbml.jsbml.ext.fbc.GeneProductAssociation extends org.sbml.jsbml.AbstractNamedSBase implements Serializable

serialVersionUID:

3080178338645314056L

Serialized Fields

association

Association association

Class org.sbml.jsbml.ext.fbc.GeneProductRef extends org.sbml.jsbml.AbstractNamedSBase implements Serializable

serialVersionUID:

-2978063936433918607L

Serialized Fields

geneProduct

String geneProduct

Class org.sbml.jsbml.ext.fbc.ListOfObjectives extends org.sbml.jsbml.ListOf<Objective> implements Serializable

serialVersionUID:

8684683156123793632L

Serialized Fields

activeObjective

String activeObjective

Class org.sbml.jsbml.ext.fbc.LogicalOperator extends org.sbml.jsbml.AbstractSBase implements Serializable

serialVersionUID:

7724258767809732147L

Serialized Fields

listOfAssociations

List<E> listOfAssociations

Class org.sbml.jsbml.ext.fbc.Objective extends org.sbml.jsbml.AbstractNamedSBase implements Serializable

serialVersionUID:

-3466570440778373634L

Serialized Fields

listOfFluxObjectives

org.sbml.jsbml.ListOf<T extends org.sbml.jsbml.SBase> listOfFluxObjectives

type

Objective.Type type

Class org.sbml.jsbml.ext.fbc.Or extends LogicalOperator implements Serializable

serialVersionUID:

-4558397941057530943L