Package org.sbml.jsbml.ext.fbc

Provides classes for the Flux Balance Constraints package (FBC).

See: Description

Interface Summary

Interface	Description
Association

Class Summary

Class	Description
AbstractFBCSBasePlugin
And	Introduced to FBC in version 2.
FBCConstants	Contains constants related to the FBC package.
FBCModelPlugin	FBCModelPlugin is the extended Model class for the FBC package.
FBCReactionPlugin	Introduced to FBC in version 2.
FBCSpeciesPlugin	FBCSpeciesPlugin is the extended Species class with the additional attributes charge and chemicalFormula
FluxBound	Deprecated Only defined in FBC Version 1.
FluxObjective	The FluxObjective class is a relatively simple container for a model variable weighted by a signed linear coefficient.
GeneProduct	Introduced to FBC in version 2.
GeneProductAssociation	Introduced to FBC in version 2.
GeneProductRef	Introduced to FBC in version 2.
ListOfObjectives	Unlike other SBML ListOf classes, ListOfObjectives adds an additional required attribute activeObjective.
LogicalOperator
Objective	An integral component in a complete description of a steady-state model is the so-called 'objective function' which generally consists of a linear combination of model variables (fluxes) and a sense (direction).
Or	Introduced to FBC in version 2.

Enum Summary

Enum	Description
FBCList	Lists used in the FBC package.
FluxBound.Operation	Deprecated Only defined in FBC version 1.
Objective.Type

Package org.sbml.jsbml.ext.fbc Description

Provides classes for the Flux Balance Constraints package (FBC).

The current JSBML implementation of this package follow the FBC version 1 release 1 specifications.

Since:

1.0

Version:

$Rev$

Author:

Nicolas Rodriguez