NamedSBase.Layout to the listOfLayouts.GraphicalObject.CompartmentGlyph to the Layout.listOfCompartmentGlyphs.GeneralGlyph object.GraphicalObject.Layout to the listOfLayouts.ReactionGlyph to this layoutGeneralGlyph.listOfReferenceGlyphs.ReactionGlyph.listOfSpeciesReferencesGlyphs.GraphicalObject to the listOfSubGlyphs.BoundingBox class specifies the required elements position and dimension.CompartmentGlyph class is derived from GraphicalObject
and inherits its attributes.PointPoint based on the
given values.PointPoint based on the
given values.BoundingBox for this object.BoundingBox for this object, with the
given parameters for Dimensions.CompartmentGlyph element and adds it to the ListOfSubGlyphs listCompartmentGlyph element and adds it to the ListOfSubGlyphs listCompartmentGlyph.CompartmentGlyph.CubicBezier instance, adds it to this Curve.Curve to this ReactionGlyph.DimensionsDimensions based on the
given values.Dimensions based on the
given values.Dimensions based on the
given values.Point.Point based on the
given values.PointPoint based on the
given values.GeneralGlyph element and adds it to the ListOfSubGlyphs listGeneralGlyph element and adds it to the ListOfSubGlyphs listGeneralGlyph.GeneralGlyph.GraphicalObject element and adds it to the ListOfSubGlyphs listGraphicalObject element and adds it to the ListOfSubGlyphs listLayout and adds it to the current list of layouts.Layout and adds it to the current list of layouts.LineSegment instance, adds it to this Curve and returns it.PointPoint based on the
given values.ReactionGlyph element and adds it to the ListOfSubGlyphs listReactionGlyph element and adds it to the ListOfSubGlyphs listReactionGlyph.ReactionGlyph.ReferenceGlyph element and adds it to the ListOfSubGlyphs listReferenceGlyphReferenceGlyph element and adds it to the ListOfSubGlyphs listReferenceGlyph element and adds it to the ListOfSubGlyphs listSpeciesGlyph element and adds it to the ListOfSubGlyphs listSpeciesGlyph element and adds it to the ListOfSubGlyphs listSpeciesGlyph with the given identifier.SpeciesGlyph.SpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs listSpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs listSpeciesReferenceGlyphSpeciesReferenceGlyphPoint.Point based on the
given values.PointPoint based on the
given values.TextGlyph element and adds it to the ListOfSubGlyphs listTextGlyph element and adds it to the ListOfSubGlyphs listTextGlyph.TextGlyph.Layout package defines the
class CubicBezier.LineSegment and CubicBezier.Dimensions is specified via the required attributes width,
height and an optional attribute depth, all of which are of type double.CompartmentGlyph within this Layout that
refer to the Compartment with the given id.ReactionGlyph within this Layout that
refer to the Reaction with the given id.SpeciesGlyph within this Layout that
refer to the Species with the given id.Layout.listOfTextGlyphs for TextGlyphs whose
TextGlyph.getOriginOfText() points to the given id.GeneralGlyph is used to facilitate the representation of elements
other than Compartment, Species
and Reaction and thus
can be used for the display of relationships of Rule
or
elements defined by other SBML packages.CompartmentGlyphs of this Layout.GraphicalObject linked to this
TextGlyph.Layouts of this LayoutModelPlugin.GeneralGlyph.listOfReferenceGlyphs has not yet been initialized, this
will be done by this method.ReactionGlyph.listOfSpeciesReferencesGlyphs has not yet been initialized, this
will be done by this method.CompartmentGlyphs of this Layout.Layouts of this LayoutModelPlugin.ReactionGlyphs of this Layout.SpeciesGlyphs of this Layout.ReactionGlyphs of this Layout.NamedSBase because it
could be possible to link some element from other packages to this glyph.SpeciesGlyphs of this Layout.NamedSBase because it
could be possible to link some element from other packages to this glyph.NamedSBase because it
could be possible to link some element from other packages to this glyph.CompartmentGlyph, GeneralGlyph,
SpeciesGlyph, ReactionGlyph, ReferenceGlyph, TextGlyph,
and SpeciesReferenceGlyph) are derived from the class GraphicalObject.GraphicalObject with the id
given by TextGlyph.getGraphicalObject() can be found in the Model.true, if listOfSubGlyphs contains at least one element.true if the x coordinate is set.true if the y coordinate is set.true if the z coordinate is set.LayoutModelPlugin cloned from the given LayoutModelPlugin.LayoutModelPlugin associate it with the given Model.LineSegment class consists of the mandatory attribute xsi:type and two child
elements of type Point.NameFilter that allows users to search for a
AbstractReferenceGlyph that refers to a NamedSBase with the
given identifier attribute.SpeciesReferenceFilter with undefined properties.NamedSBaseReferenceFilter that only accepts instances of
AbstractReferenceGlyph pointing to the id of the given NamedSBase.Point instance with all coordinates set to Double.NaN.Point instance with the given x and y coordinates.Point instance with the given coordinates.Point instance with the given coordinates and level and version.Point instance with the given level and version, all coordinates are set to Double.NaN.Reaction object has to at least have one reactant
or product, the ReactionGlyph has to at least have one
SpeciesReferenceGlyph stored in the
ReactionGlyph.listOfSpeciesReferencesGlyphs.ReferenceGlyph element describes the graphical connection between
an arbitrary GraphicalObject (or derived element) and a
GeneralGlyph (which would be an arrow or some curve in most cases).Layout.listOfAdditionalGraphicalObjects at
the given index.Layout.listOfReactionGlyphs at the given index.SpeciesGlyphs (no SpeciesReferenceGlyph
in ReactionGlyph) and also removes their associated TextGlyphsGeneralGlyph.listOfSubGlyphs at the given index.GraphicalObject.Curve.ReactionGlyph.Curve.Curve.Dimensions.Dimensions specifies the dimensions of this
layout.GraphicalObject (or derived)
object that is to be connected to the GeneralGlyph.GraphicalObject and specifies that
the TextGlyph should be considered to be a label to that object.LineSegment or of type CubicBezier.Layout.GeneralGlyph could
just contain a number of subglyphs.Species element can have several graphical representations
in the layout there must be a way to specify which SpeciesGlyph should
be connected to the ReactionGlyph.GeneralGlyph.Double.Model.BoundingBox.Reaction in the Model.ReferenceGlyph with an element of the containing Model.SpeciesReferenceRole and is used to specify
how the species reference should be displayed.SpeciesGlyph to the id
of the corresponding Species object in the Model.SpeciesGlyph
object that is to be connected to the ReactionGlyph.SpeciesReferenceGlyph with a particular SpeciesReference
of the containing Model.SpeciesGlyph class has an optional species attribute, in
addition to to the attributes from GraphicalObject.SpeciesReferenceGlyph class describes the graphical connection
between a SpeciesGlyph and a ReactionGlyph (which would be
an arrow or some curve in most cases).Layout package.TextGlyph class describes the position and dimension of text labels.Layout.listOfAdditionalGraphicalObjects from this Model and notifies
all registered instances of TreeNodeChangeListener.Layout.listOfCompartmentGlyphs from this Model and notifies
all registered instances of TreeNodeChangeListener.Curve.listOfCurveSegments from this
Model and notifies
all registered instances of
TreeNodeChangeListener.LayoutModelPlugin.listOfLayouts from this Model and notifies
all registered instances of TreeNodeChangeListener.Layout.listOfReactionGlyphs from this Model and notifies
all registered instances of TreeNodeChangeListener.Layout.listOfSpeciesGlyphs from this Model and notifies
all registered instances of TreeNodeChangeListener.true, if listOfSubGlyphs contain at least one element,
otherwise falseLayout.listOfTextGlyphs from this Model and notifies
all registered instances of TreeNodeChangeListener.Copyright © 2009–2016. All rights reserved.