Uses of Package
org.sbml.jsbml.ext.layout

Packages that use org.sbml.jsbml.ext.layout

Package	Description
org.sbml.jsbml.ext.layout	Provides classes for the Layout package.

Classes in org.sbml.jsbml.ext.layout used by org.sbml.jsbml.ext.layout

Class and Description
AbstractReferenceGlyph Abstract super class for all kinds of glyphs that graphically represent an instance of NamedSBase.
BoundingBox The BoundingBox class specifies the required elements position and dimension.
CompartmentGlyph The CompartmentGlyph class is derived from GraphicalObject and inherits its attributes.
CubicBezier Represents smooth curves in the Layout package.
Curve The Curve class describes how to connect elements in a diagram defined with the use of the Layout package.
CurveSegment Parent class to LineSegment and CubicBezier.
CurveSegment.Type
Dimensions A Dimensions is specified via the required attributes width, height and an optional attribute depth, all of which are of type double.
GeneralGlyph The GeneralGlyph is used to facilitate the representation of elements other than Compartment, Species and Reaction and thus can be used for the display of relationships of Rule or elements defined by other SBML packages.
GraphicalObject All the more specific layout elements (CompartmentGlyph, GeneralGlyph, SpeciesGlyph, ReactionGlyph, ReferenceGlyph, TextGlyph, and SpeciesReferenceGlyph) are derived from the class GraphicalObject.
IBoundingBox Defines classes that are inside a BoundingBox, which specifies the position and the size of the object.
ICurve
Layout The Layout class stores layout information for some or all elements of the Model as well as additional objects that need not be connected to the Model.
LayoutModelPlugin The Layout package extends the Model class with the addition of one child element: the listOfLayouts.
LineSegment The LineSegment class consists of the mandatory attribute xsi:type and two child elements of type Point.
Point The representation of a point in the "layout" package.
ReactionGlyph Analogous to how a Reaction object has to at least have one reactant or product, the ReactionGlyph has to at least have one SpeciesReferenceGlyph stored in the ReactionGlyph.listOfSpeciesReferenceGlyphs.
ReferenceGlyph The ReferenceGlyph element describes the graphical connection between an arbitrary GraphicalObject (or derived element) and a GeneralGlyph (which would be an arrow or some curve in most cases).
SpeciesGlyph The SpeciesGlyph class has an optional species attribute, in addition to to the attributes from GraphicalObject.
SpeciesReferenceGlyph The SpeciesReferenceGlyph class describes the graphical connection between a SpeciesGlyph and a ReactionGlyph (which would be an arrow or some curve in most cases).
SpeciesReferenceRole Enumeration that defines the different SpeciesReferenceRoles that are encoded by the Layout package.
TextGlyph The TextGlyph class describes the position and dimension of text labels.