GeneralGlyph (jsbml-layout 1.3.1 API)

java.lang.Object
- org.sbml.jsbml.AbstractTreeNode
- - org.sbml.jsbml.AbstractSBase
  - - org.sbml.jsbml.AbstractNamedSBase
    - - org.sbml.jsbml.ext.layout.GraphicalObject
      - org.sbml.jsbml.ext.layout.AbstractReferenceGlyph
        
        org.sbml.jsbml.ext.layout.GeneralGlyph

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, IBoundingBox, NamedSBase, SBase, UniqueNamedSBase, UniqueSId, TreeNodeWithChangeSupport
```
public class GeneralGlyph
extends AbstractReferenceGlyph
```
The GeneralGlyph is used to facilitate the representation of elements other than Compartment, Species and Reaction and thus can be used for the display of relationships of Rule or elements defined by other SBML packages. It closely follows the structure of the ReactionGlyph. GeneralGlyph is defined to have an optional attribute reference as well as the elements curve, listOfReferenceGlyphs and listOfSubGlyphs.

Since:

1.0

Author:

Nicolas Rodriguez, Sebastian Frölich, Andreas Dräger

See Also:

Serialized Form

Field Summary
- Fields inherited from class org.sbml.jsbml.AbstractSBase
  ignoredExtensions, ignoredXMLElements, JSBML_WRONG_SBO_TERM, packageName
- Fields inherited from class org.sbml.jsbml.AbstractTreeNode
  listOfListeners, parent, resourceBundle

Constructor Summary

Constructors
Constructor and Description
`GeneralGlyph()`
`GeneralGlyph(GeneralGlyph generalGlyph)` Creates a new instance of `GeneralGlyph` cloned from the given element.
`GeneralGlyph(int level, int version)` Creates a new instance of `GeneralGlyph`.
`GeneralGlyph(String id)` Creates a new instance of `GeneralGlyph`.
`GeneralGlyph(String id, int level, int version)` Creates a new instance of `GeneralGlyph`.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`addReferenceGlyph(ReferenceGlyph glyph)` Appends the specified element to the end of the `listOfReferenceGlyphs`.
`boolean`	`addSubGlyph(GraphicalObject subGlyph)` Adds a new `GraphicalObject` to the listOfSubGlyphs.
`GeneralGlyph`	`clone()`
`CompartmentGlyph`	`createCompartmentGlyph()` Creates a new `CompartmentGlyph` element and adds it to the ListOfSubGlyphs list.
`CompartmentGlyph`	`createCompartmentGlyph(String id)` Creates a new `CompartmentGlyph` element and adds it to the ListOfSubGlyphs list.
`GeneralGlyph`	`createGeneralGlyph()` Creates a new `GeneralGlyph` element and adds it to the ListOfSubGlyphs list.
`GeneralGlyph`	`createGeneralGlyph(String id)` Creates a new `GeneralGlyph` element and adds it to the ListOfSubGlyphs list.
`GraphicalObject`	`createGraphicalObject()` Creates a new `GraphicalObject` element and adds it to the ListOfSubGlyphs list.
`GraphicalObject`	`createGraphicalObject(String id)` Creates a new `GraphicalObject` element and adds it to the ListOfSubGlyphs list.
`ReactionGlyph`	`createReactionGlyph()` Creates a new `ReactionGlyph` element and adds it to the ListOfSubGlyphs list.
`ReactionGlyph`	`createReactionGlyph(String id)` Creates a new `ReactionGlyph` element and adds it to the ListOfSubGlyphs list.
`ReferenceGlyph`	`createReferenceGlyph()` Creates a new `ReferenceGlyph` element and adds it to the ListOfSubGlyphs list.
`ReferenceGlyph`	`createReferenceGlyph(String id)` Creates and adds a new `ReferenceGlyph`.
`ReferenceGlyph`	`createReferenceGlyphForList()` Creates a new `ReferenceGlyph` element and adds it to the ListOfSubGlyphs list.
`ReferenceGlyph`	`createReferenceGlyphForList(String id)` Creates a new `ReferenceGlyph` element and adds it to the ListOfSubGlyphs list.
`SpeciesGlyph`	`createSpeciesGlyph()` Creates a new `SpeciesGlyph` element and adds it to the ListOfSubGlyphs list.
`SpeciesGlyph`	`createSpeciesGlyph(String id)` Creates a new `SpeciesGlyph` element and adds it to the ListOfSubGlyphs list.
`SpeciesReferenceGlyph`	`createSpeciesReferenceGlyph()` Creates a new `SpeciesReferenceGlyph` element and adds it to the ListOfSubGlyphs list.
`SpeciesReferenceGlyph`	`createSpeciesReferenceGlyph(String id)` Creates a new `SpeciesReferenceGlyph` element and adds it to the ListOfSubGlyphs list.
`TextGlyph`	`createTextGlyph()` Creates a new `TextGlyph` element and adds it to the ListOfSubGlyphs list.
`TextGlyph`	`createTextGlyph(String id)` Creates a new `TextGlyph` element and adds it to the ListOfSubGlyphs list.
`boolean`	`equals(Object object)`
`TreeNode`	`getChildAt(int index)`
`int`	`getChildCount()`
`Curve`	`getCurve()` Gets the `Curve`.
`ListOf<ReferenceGlyph>`	`getListOfReferenceGlyphs()` Returns the `listOfReferenceGlyphs`.
`ListOf<GraphicalObject>`	`getListOfSubGlyphs()` Returns the listOfSubGlyphs.
`int`	`hashCode()`
`void`	`initDefaults()` Initializes the default values using the namespace.
`boolean`	`isSetCurve()` Returns `true` if the `Curve` element is not null.
`boolean`	`isSetListOfReferenceGlyphs()` Returns `true` if the `listOfReferenceGlyphs` element is not null.
`boolean`	`isSetListOfSubGlyphs()` Returns `true`, if listOfSubGlyphs contains at least one element.
`boolean`	`readAttribute(String attributeName, String prefix, String value)`
`boolean`	`removeGeneralGlyph(GraphicalObject subGlyph)` Removes an element from the listOfSubGlyphs.
`void`	`removeGeneralGlyph(int i)` Removes an element from the `listOfSubGlyphs` at the given index.
`boolean`	`removeSubGlyph(GraphicalObject subGlyph)` Removes an element from the listOfSubGlyphs.
`void`	`removeSubGlyph(int i)` Removes an element from the `listOfSubGlyphs` at the given index.
`void`	`setCurve(Curve curve)` Sets the `Curve`.
`void`	`setListOfReferenceGlyph(ListOf<ReferenceGlyph> listOfReferenceGlyph)` Sets the `listOfReferenceGlyphs`.
`void`	`setListOfSubGlyphs(ListOf<GraphicalObject> listOfSubGlyphs)` The listOfSubGlyphs is an optional list that can contain sub-glyphs of the `GeneralGlyph`.
`boolean`	`unsetListOfSubGlyphs()` Returns `true`, if listOfSubGlyphs contain at least one element, otherwise `false`
`void`	`unsetReaction()`
`Map<String,String>`	`writeXMLAttributes()`

Methods inherited from class org.sbml.jsbml.ext.layout.AbstractReferenceGlyph
getNamedSBaseInstance, getReference, getReferenceInstance, getSBaseInstance, isSetReference, setNamedSBase, setReference, setSBase, unsetReference

Methods inherited from class org.sbml.jsbml.ext.layout.GraphicalObject
createBoundingBox, createBoundingBox, createBoundingBox, createBoundingBox, getAllowsChildren, getBoundingBox, getMetaidRef, isIdMandatory, isSetBoundingBox, isSetMetaidRef, setBoundingBox, setMetaidRef, unsetBoundingBox, unsetMetaidRef

Methods inherited from class org.sbml.jsbml.AbstractNamedSBase
isValidId

Methods inherited from class org.sbml.jsbml.AbstractSBase
addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkAttribute, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getId, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, toString, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.NamedSBase
getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName

Methods inherited from interface org.sbml.jsbml.SBase
addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeTreeNodeChangeListener, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from interface javax.swing.tree.TreeNode
children, getIndex, getParent, isLeaf

- Constructor Detail
  - GeneralGlyph
```
public GeneralGlyph()
```
  - GeneralGlyph
```
public GeneralGlyph(int level,
                    int version)
```
    Creates a new instance of GeneralGlyph.
    
    Parameters:
    
    level - the SBML level
    
    version - the SBML version
  - GeneralGlyph
```
public GeneralGlyph(GeneralGlyph generalGlyph)
```
    Creates a new instance of GeneralGlyph cloned from the given element.
    
    Parameters:
    
    generalGlyph - the GeneralGlyph to clone.
  - GeneralGlyph
```
public GeneralGlyph(String id)
```
    Creates a new instance of GeneralGlyph.
    
    Parameters:
    
    id - the id
  - GeneralGlyph
```
public GeneralGlyph(String id,
                    int level,
                    int version)
```
    Creates a new instance of GeneralGlyph.
    
    Parameters:
    
    id - the id
    
    level - the SBML level
    
    version - the SBML version
- Method Detail
  - initDefaults
```
public void initDefaults()
```
    Initializes the default values using the namespace.
    
    Overrides:
    
    initDefaults in class GraphicalObject
  - isSetListOfSubGlyphs
```
public boolean isSetListOfSubGlyphs()
```
    Returns true, if listOfSubGlyphs contains at least one element.
    
    Returns:
    
    true, if listOfSubGlyphs contains at least one element, otherwise false
  - getListOfSubGlyphs
```
public ListOf<GraphicalObject> getListOfSubGlyphs()
```
    Returns the listOfSubGlyphs. Creates it if it is not already existing.
    
    Returns:
    
    the listOfSubGlyphs
  - setListOfSubGlyphs
```
public void setListOfSubGlyphs(ListOf<GraphicalObject> listOfSubGlyphs)
```
    The listOfSubGlyphs is an optional list that can contain sub-glyphs of the GeneralGlyph. One example of its use could be a sub-module containing SpeciesGlyphs and ReactionGlyphs that are not necessarily part of the enclosing Model. Another example is an Event, visualized with its Trigger and additional GeneralGlyphs for its EventAssignment. The listOfSubGlyphs consists of GraphicalObjects or derived classes. Thus, unlike the listOfAdditionalGraphicalObjects (which may only contain GraphicalObject or GeneralGlyphs), the listOfSubGlyphs may contain any derived class, such as for example TextGlyph elements. Sets the given ListOf<GraphicalObject>. If listOfSubGlyphs was defined before and contains some elements, they are all unset.
    
    Parameters:
    
    listOfSubGlyphs - the list of SubGlyphs to set.
  - unsetListOfSubGlyphs
```
public boolean unsetListOfSubGlyphs()
```
    Returns true, if listOfSubGlyphs contain at least one element, otherwise false
    
    Returns:
    
    true, if listOfSubGlyphs contain at least one element, otherwise false
  - addSubGlyph
```
public boolean addSubGlyph(GraphicalObject subGlyph)
```
    Adds a new GraphicalObject to the listOfSubGlyphs.
    The listOfSubGlyphs is initialized if necessary.
    
    Parameters:
    
    subGlyph - the element to add to the list
    
    Returns:
    
    true (as specified by Collection.add(E))
  - removeSubGlyph
```
public boolean removeSubGlyph(GraphicalObject subGlyph)
```
    Removes an element from the listOfSubGlyphs.
    
    Parameters:
    
    subGlyph - the element to be removed from the list
    
    Returns:
    
    true if the list contained the specified element
    
    See Also:
    
    List.remove(Object)
  - removeSubGlyph
```
public void removeSubGlyph(int i)
```
    Removes an element from the listOfSubGlyphs at the given index.
    
    Parameters:
    
    i - the index where to remove the glyph.
    
    Throws:
    
    IndexOutOfBoundsException - if the listOf is not set or if the index is out of bound (index < 0 || index > list.size)
  - removeGeneralGlyph
```
public void removeGeneralGlyph(int i)
```
    Removes an element from the listOfSubGlyphs at the given index.
    
    Parameters:
    
    i - the index where to remove the glyph.
  - removeGeneralGlyph
```
public boolean removeGeneralGlyph(GraphicalObject subGlyph)
```
    Removes an element from the listOfSubGlyphs.
    
    Parameters:
    
    subGlyph - the element to be removed from the list
    
    Returns:
    
    true if the list contained the specified element
    
    See Also:
    
    List.remove(Object)
  - createReferenceGlyph
```
public ReferenceGlyph createReferenceGlyph()
```
    Creates a new ReferenceGlyph element and adds it to the ListOfSubGlyphs list.
    
    Returns:
    
    the newly created ReferenceGlyph instance.
  - createTextGlyph
```
public TextGlyph createTextGlyph()
```
    Creates a new TextGlyph element and adds it to the ListOfSubGlyphs list.
    
    Returns:
    
    the newly created TextGlyph instance.
  - createTextGlyph
```
public TextGlyph createTextGlyph(String id)
```
    Creates a new TextGlyph element and adds it to the ListOfSubGlyphs list.
    
    Parameters:
    
    id - the id of the new TextGlyph instance.
    
    Returns:
    
    a new TextGlyph instance.
  - createReferenceGlyphForList
```
public ReferenceGlyph createReferenceGlyphForList()
```
    Creates a new ReferenceGlyph element and adds it to the ListOfSubGlyphs list.
    
    Returns:
    
    a new ReferenceGlyph element.
  - createReferenceGlyphForList
```
public ReferenceGlyph createReferenceGlyphForList(String id)
```
    Creates a new ReferenceGlyph element and adds it to the ListOfSubGlyphs list.
    
    Parameters:
    
    id - the id of the new ReferenceGlyph instance.
    
    Returns:
    
    a new ReferenceGlyph element.
  - createSpeciesGlyph
```
public SpeciesGlyph createSpeciesGlyph()
```
    Creates a new SpeciesGlyph element and adds it to the ListOfSubGlyphs list.
    
    Returns:
    
    a new SpeciesGlyph element.
  - createSpeciesGlyph
```
public SpeciesGlyph createSpeciesGlyph(String id)
```
    Creates a new SpeciesGlyph element and adds it to the ListOfSubGlyphs list.
    
    Parameters:
    
    id - the id of the new SpeciesGlyph instance.
    
    Returns:
    
    a new SpeciesGlyph element.
  - createSpeciesReferenceGlyph
```
public SpeciesReferenceGlyph createSpeciesReferenceGlyph()
```
    Creates a new SpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs list.
    
    Returns:
    
    a new SpeciesReferenceGlyph element.
  - createSpeciesReferenceGlyph
```
public SpeciesReferenceGlyph createSpeciesReferenceGlyph(String id)
```
    Creates a new SpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs list.
    
    Parameters:
    
    id - the id of the new SpeciesReferenceGlyph instance.
    
    Returns:
    
    a new SpeciesReferenceGlyph element.
  - createCompartmentGlyph
```
public CompartmentGlyph createCompartmentGlyph()
```
    Creates a new CompartmentGlyph element and adds it to the ListOfSubGlyphs list.
    
    Returns:
    
    a new CompartmentGlyph element.
  - createCompartmentGlyph
```
public CompartmentGlyph createCompartmentGlyph(String id)
```
    Creates a new CompartmentGlyph element and adds it to the ListOfSubGlyphs list.
    
    Parameters:
    
    id - the id of the new CompartmentGlyph instance.
    
    Returns:
    
    a new CompartmentGlyph element.
  - createGeneralGlyph
```
public GeneralGlyph createGeneralGlyph()
```
    Creates a new GeneralGlyph element and adds it to the ListOfSubGlyphs list.
    
    Returns:
    
    a new GeneralGlyph.
  - createGeneralGlyph
```
public GeneralGlyph createGeneralGlyph(String id)
```
    Creates a new GeneralGlyph element and adds it to the ListOfSubGlyphs list.
    
    Parameters:
    
    id - the id of the new GeneralGlyph instance.
    
    Returns:
    
    a new GeneralGlyph element.
  - createReactionGlyph
```
public ReactionGlyph createReactionGlyph()
```
    Creates a new ReactionGlyph element and adds it to the ListOfSubGlyphs list.
    
    Returns:
    
    a new ReactionGlyph element.
  - createReactionGlyph
```
public ReactionGlyph createReactionGlyph(String id)
```
    Creates a new ReactionGlyph element and adds it to the ListOfSubGlyphs list.
    
    Parameters:
    
    id - the id of the new ReactionGlyph instance.
    
    Returns:
    
    a new ReactionGlyph element.
  - createGraphicalObject
```
public GraphicalObject createGraphicalObject()
```
    Creates a new GraphicalObject element and adds it to the ListOfSubGlyphs list.
    
    Returns:
    
    a new GraphicalObject element.
  - createGraphicalObject
```
public GraphicalObject createGraphicalObject(String id)
```
    Creates a new GraphicalObject element and adds it to the ListOfSubGlyphs list.
    
    Parameters:
    
    id - the id of the new GraphicalObject instance.
    
    Returns:
    
    a new GraphicalObject element.
  - addReferenceGlyph
```
public boolean addReferenceGlyph(ReferenceGlyph glyph)
```
    Appends the specified element to the end of the listOfReferenceGlyphs.
    
    Parameters:
    
    glyph - the glyph to be added.
    
    Returns:
    
    true (as specified by Collection.add(E))
    
    Throws:
    
    NullPointerException - if the specified element is null and this list does not permit null elements
    
    IllegalArgumentException - if some property of this element prevents it from being added to this list
  - clone
```
public GeneralGlyph clone()
```
    Specified by:
    
    clone in interface SBase
    
    Specified by:
    
    clone in class AbstractReferenceGlyph
  - createReferenceGlyph
```
public ReferenceGlyph createReferenceGlyph(String id)
```
    Creates and adds a new ReferenceGlyph.
    
    Parameters:
    
    id - the identifier for the ReferenceGlyph to be created.
    
    Returns:
    
    a new ReferenceGlyph.
  - equals
```
public boolean equals(Object object)
```
    Specified by:
    
    equals in interface SBase
    
    Overrides:
    
    equals in class AbstractReferenceGlyph
  - getChildAt
```
public TreeNode getChildAt(int index)
```
    Specified by:
    
    getChildAt in interface TreeNode
    
    Overrides:
    
    getChildAt in class GraphicalObject
  - getChildCount
```
public int getChildCount()
```
    Specified by:
    
    getChildCount in interface TreeNode
    
    Overrides:
    
    getChildCount in class GraphicalObject
  - getCurve
```
public Curve getCurve()
```
    Gets the Curve.
    
    Returns:
    
    the Curve.
  - getListOfReferenceGlyphs
```
public ListOf<ReferenceGlyph> getListOfReferenceGlyphs()
```
    Returns the listOfReferenceGlyphs.
    If the listOfReferenceGlyphs has not yet been initialized, this will be done by this method.
    
    Returns:
    
    the listOfReferenceGlyphs
  - hashCode
```
public int hashCode()
```
    Specified by:
    
    hashCode in interface SBase
    
    Overrides:
    
    hashCode in class AbstractReferenceGlyph
  - isSetCurve
```
public boolean isSetCurve()
```
    Returns true if the Curve element is not null.
    
    Returns:
    
    true if the Curve element is set.
  - isSetListOfReferenceGlyphs
```
public boolean isSetListOfReferenceGlyphs()
```
    Returns true if the listOfReferenceGlyphs element is not null.
    
    Returns:
    
    true if the listOfReferenceGlyphs element is set.
  - readAttribute
```
public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)
```
    Specified by:
    
    readAttribute in interface SBase
    
    Overrides:
    
    readAttribute in class GraphicalObject
  - setCurve
```
public void setCurve(Curve curve)
```
    Sets the Curve.
    This is an optional attribute of type Curve. If this is defined, then the BoundingBox is to be ignored.
    
    Parameters:
    
    curve - the Curve instance to set.
  - setListOfReferenceGlyph
```
public void setListOfReferenceGlyph(ListOf<ReferenceGlyph> listOfReferenceGlyph)
```
    Sets the listOfReferenceGlyphs.
    The listOfReferenceGlyphs is optional, since conceivable the GeneralGlyph could just contain a number of subglyphs. When present, it must include at least one ReferenceGlyph.
    
    Parameters:
    
    listOfReferenceGlyph - the list of ReferenceGlyph to set.
  - unsetReaction
```
public void unsetReaction()
```
  - writeXMLAttributes
```
public Map<String,String> writeXMLAttributes()
```
    Specified by:
    
    writeXMLAttributes in interface SBase
    
    Overrides:
    
    writeXMLAttributes in class GraphicalObject

Class GeneralGlyph

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

Constructor Summary

Method Summary

Methods inherited from class org.sbml.jsbml.ext.layout.AbstractReferenceGlyph

Methods inherited from class org.sbml.jsbml.ext.layout.GraphicalObject

Methods inherited from class org.sbml.jsbml.AbstractNamedSBase

Methods inherited from class org.sbml.jsbml.AbstractSBase

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

Methods inherited from class java.lang.Object

Methods inherited from interface org.sbml.jsbml.NamedSBase

Methods inherited from interface org.sbml.jsbml.SBase

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

Methods inherited from interface javax.swing.tree.TreeNode

Constructor Detail

GeneralGlyph

GeneralGlyph

GeneralGlyph

GeneralGlyph

GeneralGlyph

Method Detail

initDefaults

isSetListOfSubGlyphs

getListOfSubGlyphs

setListOfSubGlyphs

unsetListOfSubGlyphs

addSubGlyph

removeSubGlyph

removeSubGlyph

removeGeneralGlyph

removeGeneralGlyph

createReferenceGlyph

createTextGlyph

createTextGlyph

createReferenceGlyphForList

createReferenceGlyphForList

createSpeciesGlyph

createSpeciesGlyph

createSpeciesReferenceGlyph

createSpeciesReferenceGlyph

createCompartmentGlyph

createCompartmentGlyph

createGeneralGlyph

createGeneralGlyph

createReactionGlyph

createReactionGlyph

createGraphicalObject

createGraphicalObject

addReferenceGlyph

clone

createReferenceGlyph

equals

getChildAt

getChildCount

getCurve

getListOfReferenceGlyphs

hashCode

isSetCurve

isSetListOfReferenceGlyphs

readAttribute

setCurve

setListOfReferenceGlyph

unsetReaction

writeXMLAttributes