NamedSBase.AbstractReferenceGlyph.AbstractReferenceGlyph.AbstractReferenceGlyph.AbstractReferenceGlyph.AbstractReferenceGlyph from the given glyph.Layout to the listOfLayouts.GraphicalObject.CompartmentGlyph to the Layout.listOfCompartmentGlyphs.GeneralGlyph object.GraphicalObject.Layout to the listOfLayouts.ReactionGlyph to this layoutGeneralGlyph.listOfReferenceGlyphs.ReactionGlyph.listOfSpeciesReferenceGlyphs.GraphicalObject to the listOfSubGlyphs.BoundingBox class specifies the required elements position and dimension.BoundingBox.BoundingBox.BoundingBox.BoundingBox.BoundingBox.ValidationFunction instances) for the BoundingBox class.CompartmentGlyph class is derived from GraphicalObject
and inherits its attributes.CompartmentGlyph.CompartmentGlyph.CompartmentGlyph.CompartmentGlyph.CompartmentGlyph.ValidationFunction instances) for the CompartmentGlyph class.PointPoint based on the
given values.PointPoint based on the
given values.BoundingBox for this object.BoundingBox for this object, with the
given parameters for Dimensions.CompartmentGlyph element and adds it to the ListOfSubGlyphs list.CompartmentGlyph element and adds it to the ListOfSubGlyphs list.CompartmentGlyph.CompartmentGlyph.CubicBezier instance, adds it to this ICurve.Curve to this ReactionGlyph.DimensionsDimensions based on the
given values.Dimensions based on the
given values.Dimensions based on the
given values.Point.PointPoint based on the
given values.Point based on the
given values.GeneralGlyph element and adds it to the ListOfSubGlyphs list.GeneralGlyph element and adds it to the ListOfSubGlyphs list.GeneralGlyph.GeneralGlyph.GraphicalObject element and adds it to the ListOfSubGlyphs list.GraphicalObject element and adds it to the ListOfSubGlyphs list.Layout and adds it to the current list of layouts.Layout and adds it to the current list of layouts.LineSegment instance, adds it to this Curve and returns it.PointPoint based on the
given values.ReactionGlyph element and adds it to the ListOfSubGlyphs list.ReactionGlyph element and adds it to the ListOfSubGlyphs list.ReactionGlyph.ReactionGlyph.ReferenceGlyph element and adds it to the ListOfSubGlyphs list.ReferenceGlyph.ReferenceGlyph element and adds it to the ListOfSubGlyphs list.ReferenceGlyph element and adds it to the ListOfSubGlyphs list.SpeciesGlyph element and adds it to the ListOfSubGlyphs list.SpeciesGlyph element and adds it to the ListOfSubGlyphs list.SpeciesGlyph with the given identifier.SpeciesGlyph.SpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs list.SpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs list.SpeciesReferenceGlyphSpeciesReferenceGlyphPoint.PointPoint based on the
given values.Point based on the
given values.TextGlyph element and adds it to the ListOfSubGlyphs list.TextGlyph element and adds it to the ListOfSubGlyphs list.TextGlyph.TextGlyph.Layout package.ValidationFunction instances) for the CubicBezier class.ValidationFunction instances) for the Curve class.LineSegment and CubicBezier.Dimensions is specified via the required attributes width,
height and an optional attribute depth, all of which are of type double.ValidationFunction instances) for the Dimensions class.CompartmentGlyph within this Layout that
refer to the Compartment with the given id.ReactionGlyph within this Layout that
refer to the Reaction with the given id.SpeciesGlyph within this Layout that
refer to the Species with the given id.Layout.listOfTextGlyphs for TextGlyphs whose
TextGlyph.getOriginOfText() points to the given id.GeneralGlyph is used to facilitate the representation of elements
other than Compartment, Species
and Reaction and thus
can be used for the display of relationships of Rule
or
elements defined by other SBML packages.GeneralGlyph.GeneralGlyph.GeneralGlyph.GeneralGlyph cloned from the given element.ValidationFunction instances) for the GeneralGlyph class.BoundingBox.CompartmentGlyphs of this Layout.Curve.GraphicalObject linked to this
TextGlyph.Layouts of this LayoutModelPlugin.GeneralGlyph.listOfReferenceGlyphs.SpeciesReferenceGlyphs.NamedSBase instance corresponding to the reference id.CompartmentGlyphs of this Layout.Layouts of this LayoutModelPlugin.ReactionGlyphs of this Layout.SpeciesGlyphs of this Layout.ReactionGlyphs of this Layout.NamedSBase because it
could be possible to link some element from other packages to this glyph.NamedSBase instance corresponding to the reference id.SBase instance corresponding to the reference id.SpeciesGlyphs of this Layout.NamedSBase because it
could be possible to link some element from other packages to this glyph.NamedSBase because it
could be possible to link some element from other packages to this glyph.CompartmentGlyph, GeneralGlyph,
SpeciesGlyph, ReactionGlyph, ReferenceGlyph, TextGlyph,
and SpeciesReferenceGlyph) are derived from the class GraphicalObject.ValidationFunction instances) for the GraphicalObject class.BoundingBox, which
specifies the position and the size of the object.true is the BoundingBox is set.true if the Curve element is not null.GraphicalObject with the id
given by TextGlyph.getGraphicalObject() can be found in the Model.true if the GeneralGlyph.listOfReferenceGlyphs element is not null.true is the list of SpeciesReferenceGlyph is set.true, if listOfSubGlyphs contains at least one element.true if the reference attribute is not null and not empty.true if the x coordinate is set.true if the y coordinate is set.true if the z coordinate is set.ValidationFunction instances) for the Layout class.LayoutModelPlugin cloned from the given LayoutModelPlugin.LayoutModelPlugin associate it with the given Model.ValidationFunction instances) for the LayoutModelPlugin class.LineSegment class consists of the mandatory attribute xsi:type and two child
elements of type Point.ValidationFunction instances) for the LineSegment class.NameFilter that allows users to search for a
AbstractReferenceGlyph that refers to a NamedSBase with the
given identifier attribute.SpeciesReferenceFilter with undefined properties.NamedSBaseReferenceFilter that only accepts instances of
AbstractReferenceGlyph pointing to the id of the given NamedSBase.Point instance with all coordinates set to Double.NaN.Point instance with the given x and y coordinates. z is set to Double.NaN.Point instance with the given coordinates.Point instance with the given coordinates and level and version.Point instance with the given level and version, all coordinates are set to Double.NaN.ValidationFunction instances) for the Point class.Reaction object has to at least have one reactant
or product, the ReactionGlyph has to at least have one
SpeciesReferenceGlyph stored in the
ReactionGlyph.listOfSpeciesReferenceGlyphs.ValidationFunction instances) for the ReactionGlyph class.ReferenceGlyph element describes the graphical connection between
an arbitrary GraphicalObject (or derived element) and a
GeneralGlyph (which would be an arrow or some curve in most cases).ValidationFunction instances) for the ReferenceGlyph class.CubicBezier
CubicBezier.isSetBasePoint1() is
falseCubicBezier
CubicBezier.isSetBasePoint2() is
falseGeneralGlyph.listOfSubGlyphs at the given index.Layout.listOfAdditionalGraphicalObjects at
the given index.Layout.listOfReactionGlyphs at the given index.SpeciesGlyphs (no SpeciesReferenceGlyph
in ReactionGlyph) and also removes their associated TextGlyphsGeneralGlyph.listOfSubGlyphs at the given index.BoundingBox.Curve.ReactionGlyph.Curve.Curve.Dimensions.Dimensions specifies the dimensions of this
layout.GraphicalObject (or derived)
object that is to be connected to the GeneralGlyph.GraphicalObject and specifies that
the TextGlyph should be considered to be a label to that object.Layout.listOfAdditionalGraphicalObjects.LineSegment or of type CubicBezier.Layout.GeneralGlyph.listOfReferenceGlyphs.SpeciesReferenceGlyphs.GeneralGlyph.NamedSBase.Model.ReferenceGlyph with an element of the containing Model.SpeciesReferenceRole and is used to specify
how the species reference should be displayed.SBase.SpeciesGlyph to the id
of the corresponding Species object in the Model.SpeciesGlyph
object that is to be connected to the ReactionGlyph.SpeciesReferenceGlyph with a particular SpeciesReference
of the containing Model.SpeciesGlyph class has an optional species attribute, in
addition to to the attributes from GraphicalObject.ValidationFunction instances) for the SpeciesGlyph class.SpeciesReferenceGlyph class describes the graphical connection
between a SpeciesGlyph and a ReactionGlyph (which would be
an arrow or some curve in most cases).ValidationFunction instances) for the SpeciesReferenceGlyph class.Layout package.TextGlyph class describes the position and dimension of text labels.ValidationFunction instances) for the TextGlyph class.BoundingBox.Layout.dimensions (and fires appropriate event)LineSegmentReferenceGlyph.glyph attributeLayout.listOfAdditionalGraphicalObjects from this Model and notifies
all registered instances of TreeNodeChangeListener.Layout.listOfCompartmentGlyphs from this Model and notifies
all registered instances of TreeNodeChangeListener.#listOfCurveSegments from this
Model and notifies
all registered instances of
TreeNodeChangeListener.LayoutModelPlugin.listOfLayouts from this Model and notifies
all registered instances of TreeNodeChangeListener.Layout.listOfReactionGlyphs from this Model and notifies
all registered instances of TreeNodeChangeListener.Layout.listOfSpeciesGlyphs from this Model and notifies
all registered instances of TreeNodeChangeListener.SpeciesReferenceGlyphs.true, if listOfSubGlyphs contain at least one element,
otherwise falseLayout.listOfTextGlyphs from this Model and notifies
all registered instances of TreeNodeChangeListener.ReferenceGlyph.role attributeSpeciesReferenceGlyph.role (and fires appropriate Event)SpeciesReferenceGlyph.speciesGlyphLineSegmentTextGlyph.text attributeCopyright © 2009–2022. All rights reserved.