Package org.sbml.jsbml.ext.layout

Class GeneralGlyph

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.AbstractNamedSBase

org.sbml.jsbml.ext.layout.GraphicalObject

org.sbml.jsbml.ext.layout.AbstractReferenceGlyph

org.sbml.jsbml.ext.layout.GeneralGlyph

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, javax.swing.tree.TreeNode, IBoundingBox, NamedSBase, SBase, UniqueNamedSBase, UniqueSId, TreeNodeWithChangeSupport

public class GeneralGlyph
extends AbstractReferenceGlyph

The GeneralGlyph is used to facilitate the representation of elements other than Compartment, Species and Reaction and thus can be used for the display of relationships of Rule or elements defined by other SBML packages. It closely follows the structure of the ReactionGlyph. GeneralGlyph is defined to have an optional attribute reference as well as the elements curve, listOfReferenceGlyphs and listOfSubGlyphs.

Since:

1.0

Author:

Nicolas Rodriguez, Sebastian Frölich, Andreas Dräger, David Vetter

See Also:

Serialized Form

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, JSBML_WRONG_SBO_TERM, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle

Constructor Summary

Constructors

Constructor	Description
GeneralGlyph()
GeneralGlyph(int level, int version)	Creates a new instance of GeneralGlyph.
GeneralGlyph(java.lang.String id)	Creates a new instance of GeneralGlyph.
GeneralGlyph(java.lang.String id, int level, int version)	Creates a new instance of GeneralGlyph.
GeneralGlyph(GeneralGlyph generalGlyph)	Creates a new instance of GeneralGlyph cloned from the given element.

Method Summary

Modifier and Type	Method	Description
boolean	addReferenceGlyph(ReferenceGlyph glyph)	Appends the specified element to the end of the listOfReferenceGlyphs.
boolean	addSubGlyph(GraphicalObject subGlyph)	Adds a new GraphicalObject to the listOfSubGlyphs.
GeneralGlyph	clone()
CompartmentGlyph	createCompartmentGlyph()	Creates a new CompartmentGlyph element and adds it to the ListOfSubGlyphs list.
CompartmentGlyph	createCompartmentGlyph(java.lang.String id)	Creates a new CompartmentGlyph element and adds it to the ListOfSubGlyphs list.
GeneralGlyph	createGeneralGlyph()	Creates a new GeneralGlyph element and adds it to the ListOfSubGlyphs list.
GeneralGlyph	createGeneralGlyph(java.lang.String id)	Creates a new GeneralGlyph element and adds it to the ListOfSubGlyphs list.
GraphicalObject	createGraphicalObject()	Creates a new GraphicalObject element and adds it to the ListOfSubGlyphs list.
GraphicalObject	createGraphicalObject(java.lang.String id)	Creates a new GraphicalObject element and adds it to the ListOfSubGlyphs list.
ReactionGlyph	createReactionGlyph()	Creates a new ReactionGlyph element and adds it to the ListOfSubGlyphs list.
ReactionGlyph	createReactionGlyph(java.lang.String id)	Creates a new ReactionGlyph element and adds it to the ListOfSubGlyphs list.
ReferenceGlyph	createReferenceGlyph()	Creates a new ReferenceGlyph element and adds it to the ListOfSubGlyphs list.
ReferenceGlyph	createReferenceGlyph(java.lang.String id)	Creates and adds a new ReferenceGlyph.
ReferenceGlyph	createReferenceGlyphForList()	Creates a new ReferenceGlyph element and adds it to the ListOfSubGlyphs list.
ReferenceGlyph	createReferenceGlyphForList(java.lang.String id)	Creates a new ReferenceGlyph element and adds it to the ListOfSubGlyphs list.
SpeciesGlyph	createSpeciesGlyph()	Creates a new SpeciesGlyph element and adds it to the ListOfSubGlyphs list.
SpeciesGlyph	createSpeciesGlyph(java.lang.String id)	Creates a new SpeciesGlyph element and adds it to the ListOfSubGlyphs list.
SpeciesReferenceGlyph	createSpeciesReferenceGlyph()	Creates a new SpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs list.
SpeciesReferenceGlyph	createSpeciesReferenceGlyph(java.lang.String id)	Creates a new SpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs list.
TextGlyph	createTextGlyph()	Creates a new TextGlyph element and adds it to the ListOfSubGlyphs list.
TextGlyph	createTextGlyph(java.lang.String id)	Creates a new TextGlyph element and adds it to the ListOfSubGlyphs list.
boolean	equals(java.lang.Object object)
javax.swing.tree.TreeNode	getChildAt(int index)
int	getChildCount()
Curve	getCurve()	Gets the Curve.
ListOf<ReferenceGlyph>	getListOfReferenceGlyphs()	Returns the listOfReferenceGlyphs.
ListOf<GraphicalObject>	getListOfSubGlyphs()	Returns the listOfSubGlyphs.
int	hashCode()
void	initDefaults()	Initializes the default values using the namespace.
boolean	isSetCurve()	Returns true if the Curve element is not null.
boolean	isSetListOfReferenceGlyphs()	Returns true if the listOfReferenceGlyphs element is not null.
boolean	isSetListOfSubGlyphs()	Returns true, if listOfSubGlyphs contains at least one element.
boolean	readAttribute(java.lang.String attributeName, java.lang.String prefix, java.lang.String value)
void	removeGeneralGlyph(int i)	Removes an element from the listOfSubGlyphs at the given index.
boolean	removeGeneralGlyph(GraphicalObject subGlyph)	Removes an element from the listOfSubGlyphs.
void	removeSubGlyph(int i)	Removes an element from the listOfSubGlyphs at the given index.
boolean	removeSubGlyph(GraphicalObject subGlyph)	Removes an element from the listOfSubGlyphs.
void	setCurve(Curve curve)	Sets the Curve.
void	setListOfReferenceGlyph(ListOf<ReferenceGlyph> listOfReferenceGlyph)	Sets the listOfReferenceGlyphs.
void	setListOfSubGlyphs(ListOf<GraphicalObject> listOfSubGlyphs)	The listOfSubGlyphs is an optional list that can contain sub-glyphs of the GeneralGlyph.
void	unsetCurve()	Unsets the curve (and fires appropriate Event)
boolean	unsetListOfSubGlyphs()	Returns true, if listOfSubGlyphs contain at least one element, otherwise false
void	unsetReaction()
java.util.Map<java.lang.String,java.lang.String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.AbstractNamedSBase

isValidId

Methods inherited from class org.sbml.jsbml.ext.layout.AbstractReferenceGlyph

getNamedSBaseInstance, getReference, getReferenceInstance, getSBaseInstance, isSetReference, setNamedSBase, setReference, setSBase, unsetReference

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, addResources, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkAttribute, checkIdentifier, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAllDeclaredNamespaces, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getFirstElementIndex, getHistory, getId, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasExtension, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, removeDeclaredNamespaceByNamespace, removeDeclaredNamespaceByPrefix, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, replaceTopLevelAnnotationElement, replaceTopLevelAnnotationElement, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, toString, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isCloningInProgress, isInvalidSBMLAllowed, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class org.sbml.jsbml.ext.layout.GraphicalObject

createBoundingBox, createBoundingBox, createBoundingBox, createBoundingBox, getAllowsChildren, getBoundingBox, getMetaidRef, isIdMandatory, isSetBoundingBox, isSetMetaidRef, setBoundingBox, setMetaidRef, unsetBoundingBox, unsetMetaidRef

Methods inherited from interface org.sbml.jsbml.NamedSBase

getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.SBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasExtension, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeDeclaredNamespaceByNamespace, removeDeclaredNamespaceByPrefix, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, removeTreeNodeChangeListener, replaceTopLevelAnnotationElement, replaceTopLevelAnnotationElement, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, getParent, isLeaf

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Constructor Detail

GeneralGlyph

public GeneralGlyph()

GeneralGlyph

public GeneralGlyph(int level,
                    int version)

Creates a new instance of GeneralGlyph.

Parameters:

level - the SBML level

version - the SBML version

GeneralGlyph

public GeneralGlyph(GeneralGlyph generalGlyph)

Creates a new instance of GeneralGlyph cloned from the given element.

Parameters:

generalGlyph - the GeneralGlyph to clone.

GeneralGlyph

public GeneralGlyph(java.lang.String id)

Creates a new instance of GeneralGlyph.

Parameters:

id - the id

GeneralGlyph

public GeneralGlyph(java.lang.String id,
                    int level,
                    int version)

Creates a new instance of GeneralGlyph.

Parameters:

id - the id

level - the SBML level

version - the SBML version

Method Detail

initDefaults

public void initDefaults()

Initializes the default values using the namespace.

Overrides:

initDefaults in class GraphicalObject

isSetListOfSubGlyphs

public boolean isSetListOfSubGlyphs()

Returns true, if listOfSubGlyphs contains at least one element.

Returns:

true, if listOfSubGlyphs contains at least one element, otherwise false

getListOfSubGlyphs

public ListOf<GraphicalObject> getListOfSubGlyphs()

Returns the listOfSubGlyphs. Creates it if it is not already existing.

Returns:

the listOfSubGlyphs

setListOfSubGlyphs

public void setListOfSubGlyphs(ListOf<GraphicalObject> listOfSubGlyphs)

The listOfSubGlyphs is an optional list that can contain sub-glyphs of the GeneralGlyph. One example of its use could be a sub-module containing SpeciesGlyphs and ReactionGlyphs that are not necessarily part of the enclosing Model. Another example is an Event, visualized with its Trigger and additional GeneralGlyphs for its EventAssignment. The listOfSubGlyphs consists of GraphicalObjects or derived classes. Thus, unlike the listOfAdditionalGraphicalObjects (which may only contain GraphicalObject or GeneralGlyphs), the listOfSubGlyphs may contain any derived class, such as for example TextGlyph elements. Sets the given ListOf<GraphicalObject>. If listOfSubGlyphs was defined before and contains some elements, they are all unset.

Parameters:

listOfSubGlyphs - the list of SubGlyphs to set.

unsetListOfSubGlyphs

public boolean unsetListOfSubGlyphs()

Returns true, if listOfSubGlyphs contain at least one element, otherwise false

Returns:

true, if listOfSubGlyphs contain at least one element, otherwise false

addSubGlyph

public boolean addSubGlyph(GraphicalObject subGlyph)

Adds a new GraphicalObject to the listOfSubGlyphs.

The listOfSubGlyphs is initialized if necessary.

Parameters:

subGlyph - the element to add to the list

Returns:

true (as specified by Collection.add(E))

removeSubGlyph

public boolean removeSubGlyph(GraphicalObject subGlyph)

Removes an element from the listOfSubGlyphs.

Parameters:

subGlyph - the element to be removed from the list

Returns:

true if the list contained the specified element

See Also:

List.remove(Object)

removeSubGlyph

public void removeSubGlyph(int i)

Removes an element from the listOfSubGlyphs at the given index.

Parameters:

i - the index where to remove the glyph.

Throws:

java.lang.IndexOutOfBoundsException - if the listOf is not set or if the index is out of bound (index < 0 || index > list.size)

removeGeneralGlyph

public void removeGeneralGlyph(int i)

Removes an element from the listOfSubGlyphs at the given index.

Parameters:

i - the index where to remove the glyph.

removeGeneralGlyph

public boolean removeGeneralGlyph(GraphicalObject subGlyph)

Removes an element from the listOfSubGlyphs.

Parameters:

subGlyph - the element to be removed from the list

Returns:

true if the list contained the specified element

See Also:

List.remove(Object)

createReferenceGlyph

public ReferenceGlyph createReferenceGlyph()

Creates a new ReferenceGlyph element and adds it to the ListOfSubGlyphs list.

Returns:

the newly created ReferenceGlyph instance.

createTextGlyph

public TextGlyph createTextGlyph()

Creates a new TextGlyph element and adds it to the ListOfSubGlyphs list.

Returns:

the newly created TextGlyph instance.

createTextGlyph

public TextGlyph createTextGlyph(java.lang.String id)

Creates a new TextGlyph element and adds it to the ListOfSubGlyphs list.

Parameters:

id - the id of the new TextGlyph instance.

Returns:

a new TextGlyph instance.

createReferenceGlyphForList

public ReferenceGlyph createReferenceGlyphForList()

Creates a new ReferenceGlyph element and adds it to the ListOfSubGlyphs list.

Returns:

a new ReferenceGlyph element.

createReferenceGlyphForList

public ReferenceGlyph createReferenceGlyphForList(java.lang.String id)

Creates a new ReferenceGlyph element and adds it to the ListOfSubGlyphs list.

Parameters:

id - the id of the new ReferenceGlyph instance.

Returns:

a new ReferenceGlyph element.

createSpeciesGlyph

public SpeciesGlyph createSpeciesGlyph()

Creates a new SpeciesGlyph element and adds it to the ListOfSubGlyphs list.

Returns:

a new SpeciesGlyph element.

createSpeciesGlyph

public SpeciesGlyph createSpeciesGlyph(java.lang.String id)

Creates a new SpeciesGlyph element and adds it to the ListOfSubGlyphs list.

Parameters:

id - the id of the new SpeciesGlyph instance.

Returns:

a new SpeciesGlyph element.

createSpeciesReferenceGlyph

public SpeciesReferenceGlyph createSpeciesReferenceGlyph()

Creates a new SpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs list.

Returns:

a new SpeciesReferenceGlyph element.

createSpeciesReferenceGlyph

public SpeciesReferenceGlyph createSpeciesReferenceGlyph(java.lang.String id)

Creates a new SpeciesReferenceGlyph element and adds it to the ListOfSubGlyphs list.

Parameters:

id - the id of the new SpeciesReferenceGlyph instance.

Returns:

a new SpeciesReferenceGlyph element.

createCompartmentGlyph

public CompartmentGlyph createCompartmentGlyph()

Creates a new CompartmentGlyph element and adds it to the ListOfSubGlyphs list.

Returns:

a new CompartmentGlyph element.

createCompartmentGlyph

public CompartmentGlyph createCompartmentGlyph(java.lang.String id)

Creates a new CompartmentGlyph element and adds it to the ListOfSubGlyphs list.

Parameters:

id - the id of the new CompartmentGlyph instance.

Returns:

a new CompartmentGlyph element.

createGeneralGlyph

public GeneralGlyph createGeneralGlyph()

Creates a new GeneralGlyph element and adds it to the ListOfSubGlyphs list.

Returns:

a new GeneralGlyph.

createGeneralGlyph

public GeneralGlyph createGeneralGlyph(java.lang.String id)

Creates a new GeneralGlyph element and adds it to the ListOfSubGlyphs list.

Parameters:

id - the id of the new GeneralGlyph instance.

Returns:

a new GeneralGlyph element.

createReactionGlyph

public ReactionGlyph createReactionGlyph()

Creates a new ReactionGlyph element and adds it to the ListOfSubGlyphs list.

Returns:

a new ReactionGlyph element.

createReactionGlyph

public ReactionGlyph createReactionGlyph(java.lang.String id)

Creates a new ReactionGlyph element and adds it to the ListOfSubGlyphs list.

Parameters:

id - the id of the new ReactionGlyph instance.

Returns:

a new ReactionGlyph element.

createGraphicalObject

public GraphicalObject createGraphicalObject()

Creates a new GraphicalObject element and adds it to the ListOfSubGlyphs list.

Returns:

a new GraphicalObject element.

createGraphicalObject

public GraphicalObject createGraphicalObject(java.lang.String id)

Creates a new GraphicalObject element and adds it to the ListOfSubGlyphs list.

Parameters:

id - the id of the new GraphicalObject instance.

Returns:

a new GraphicalObject element.

addReferenceGlyph

public boolean addReferenceGlyph(ReferenceGlyph glyph)

Appends the specified element to the end of the listOfReferenceGlyphs.

Parameters:

glyph - the glyph to be added.

Returns:

true (as specified by Collection.add(E))

Throws:

java.lang.NullPointerException - if the specified element is null and this list does not permit null elements

java.lang.IllegalArgumentException - if some property of this element prevents it from being added to this list

clone

public GeneralGlyph clone()

Specified by:

clone in interface SBase

Specified by:

clone in class AbstractReferenceGlyph

createReferenceGlyph

public ReferenceGlyph createReferenceGlyph(java.lang.String id)

Creates and adds a new ReferenceGlyph.

Parameters:

id - the identifier for the ReferenceGlyph to be created.

Returns:

a new ReferenceGlyph.

equals

public boolean equals(java.lang.Object object)

Specified by:

equals in interface SBase

Overrides:

equals in class AbstractReferenceGlyph

getChildAt

public javax.swing.tree.TreeNode getChildAt(int index)

Specified by:

getChildAt in interface javax.swing.tree.TreeNode

Overrides:

getChildAt in class GraphicalObject

getChildCount

public int getChildCount()

Specified by:

getChildCount in interface javax.swing.tree.TreeNode

Overrides:

getChildCount in class GraphicalObject

getCurve

public Curve getCurve()

Gets the Curve.

Returns:

the Curve.

getListOfReferenceGlyphs

public ListOf<ReferenceGlyph> getListOfReferenceGlyphs()

Returns the listOfReferenceGlyphs.

If the listOfReferenceGlyphs has not yet been initialized, this will be done by this method.

Returns:

the listOfReferenceGlyphs

hashCode

public int hashCode()

Specified by:

hashCode in interface SBase

Overrides:

hashCode in class AbstractReferenceGlyph

isSetCurve

public boolean isSetCurve()

Returns true if the Curve element is not null.

Returns:

true if the Curve element is set.

isSetListOfReferenceGlyphs

public boolean isSetListOfReferenceGlyphs()

Returns true if the listOfReferenceGlyphs element is not null.

Returns:

true if the listOfReferenceGlyphs element is set.

readAttribute

public boolean readAttribute(java.lang.String attributeName,
                             java.lang.String prefix,
                             java.lang.String value)

Specified by:

readAttribute in interface SBase

Overrides:

readAttribute in class GraphicalObject

setCurve

public void setCurve(Curve curve)

Sets the Curve.

This is an optional attribute of type Curve. If this is defined, then the BoundingBox is to be ignored.

Parameters:

curve - the Curve instance to set.

setListOfReferenceGlyph

public void setListOfReferenceGlyph(ListOf<ReferenceGlyph> listOfReferenceGlyph)

Sets the listOfReferenceGlyphs.

The listOfReferenceGlyphs is optional, since conceivable the GeneralGlyph could just contain a number of subglyphs. When present, it must include at least one ReferenceGlyph.

Parameters:

listOfReferenceGlyph - the list of ReferenceGlyph to set.

unsetReaction

public void unsetReaction()

unsetCurve

public void unsetCurve()

Unsets the curve (and fires appropriate Event)

writeXMLAttributes

public java.util.Map<java.lang.String,java.lang.String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface SBase

Overrides:

writeXMLAttributes in class GraphicalObject