Package org.sbml.jsbml.ext.layout

Class NamedSBaseReferenceFilter

java.lang.Object

org.sbml.jsbml.util.filters.NameFilter

org.sbml.jsbml.ext.layout.NamedSBaseReferenceFilter

All Implemented Interfaces:

Filter

public class NamedSBaseReferenceFilter
extends NameFilter

This is a special NameFilter that allows users to search for a AbstractReferenceGlyph that refers to a NamedSBase with the given identifier attribute. The boolean switch filterForReference that can be changed using the setFilterForReference(boolean) method decides whether this NamedSBaseReferenceFilter should use the given identifier to filter for the actual AbstractReferenceGlyph or for the referenced NamedSBase.

Since:

1.0

Author:

Andreas Dräger

Constructor Summary

Constructors

Constructor	Description
NamedSBaseReferenceFilter()	Creates a new SpeciesReferenceFilter with undefined properties.
NamedSBaseReferenceFilter(java.lang.String id)
NamedSBaseReferenceFilter(java.lang.String id, java.lang.String name)
NamedSBaseReferenceFilter(NamedSBase glyph)	Creates a new NamedSBaseReferenceFilter that only accepts instances of AbstractReferenceGlyph pointing to the id of the given NamedSBase.

Method Summary

Modifier and Type	Method	Description
boolean	accepts(java.lang.Object o)
boolean	isFilterForSpecies()
void	setFilterForReference(boolean filterForSpecies)

Methods inherited from class org.sbml.jsbml.util.filters.NameFilter

getId, getName, setId, setName

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NamedSBaseReferenceFilter

public NamedSBaseReferenceFilter()

Creates a new SpeciesReferenceFilter with undefined properties.

NamedSBaseReferenceFilter

public NamedSBaseReferenceFilter(NamedSBase glyph)

Creates a new NamedSBaseReferenceFilter that only accepts instances of AbstractReferenceGlyph pointing to the id of the given NamedSBase.

Parameters:

glyph - the NamedSBase of interest.

NamedSBaseReferenceFilter

public NamedSBaseReferenceFilter(java.lang.String id)

Parameters:

id - the identifier of a NamedSBase or AbstractReferenceGlyph we are interested in. Whether we accept the id of a NamedSBase or a AbstractReferenceGlyph depends on the flag that can be defined with setFilterForReference(boolean).

See Also:

setFilterForReference(boolean)

NamedSBaseReferenceFilter

public NamedSBaseReferenceFilter(java.lang.String id,
                                 java.lang.String name)

Parameters:

id - the identifier of a NamedSBase or AbstractReferenceGlyph we are interested in. Whether we accept the id of a NamedSBase or a AbstractReferenceGlyph depends on the flag that can be defined with setFilterForReference(boolean).

name - the name of the element we are interested in.

See Also:

setFilterForReference(boolean)

Method Detail

accepts

public boolean accepts(java.lang.Object o)

Specified by:

accepts in interface Filter

Overrides:

accepts in class NameFilter

isFilterForSpecies

public boolean isFilterForSpecies()

Returns:

the filterForSpecies

setFilterForReference

public void setFilterForReference(boolean filterForSpecies)

Parameters:

filterForSpecies - the filterForSpecies to set