public class Bond extends AbstractSBase
| Modifier and Type | Class and Description |
|---|---|
static class |
Bond.BOND_OCCURRENCE_TYPE |
ignoredExtensions, ignoredXMLElementslistOfListeners, parent, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS| Constructor and Description |
|---|
Bond() |
addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendNotes, appendNotes, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, equals, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAllowsChildren, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hashCode, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setHistory, setLevel, setMetaId, setNamespace, setNotes, setNotes, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTermaddAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySetfinalize, getClass, notify, notifyAll, wait, wait, waitremoveTreeNodeChangeListeneraddAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySetpublic AbstractSBase clone()
clone in interface SBaseclone in class AbstractSBasepublic Bond.BOND_OCCURRENCE_TYPE getOccurence()
public void setOccurence(Bond.BOND_OCCURRENCE_TYPE occurence)
occurence - the occurrence to setpublic boolean isSetOccurence()
true if the occurrence is set.true if the occurrence is set.public BindingSiteReference getBindingSiteReference1()
BindingSiteReferenceBindingSiteReferencepublic void setBindingSiteReference1(BindingSiteReference bindingSite1)
BindingSiteReference.bindingSite1 - the BindingSiteReference to setpublic boolean isSetBindingSiteReference1()
true if the first BindingSiteReference is set.true if the first BindingSiteReference is set.public BindingSiteReference getBindingSiteReference2()
BindingSiteReference.BindingSiteReference.public void setBindingSiteReference2(BindingSiteReference bindingSiteReference2)
BindingSiteReference.bindingSiteReference2 - the BindingSiteReference to setpublic boolean isSetBindingSiteReference2()
true if the second BindingSiteReference is set.true if the second BindingSiteReference is set.public boolean addBindingSiteReference(BindingSiteReference bindingSiteReference)
BindingSiteReference to this Bond. If there are
already two BindingSiteReferences, the new BindingSiteReference is
not added and false is returned.bindingSiteReference - true is the BindingSiteReference was added successfully to the Bond.public String toString()
toString in class AbstractSBasepublic void initDefaults()
public TreeNode getChildAt(int index)
getChildAt in interface TreeNodegetChildAt in class AbstractSBasepublic int getChildCount()
getChildCount in interface TreeNodegetChildCount in class AbstractSBasepublic boolean readAttribute(String attributeName, String prefix, String value)
readAttribute in interface SBasereadAttribute in class AbstractSBasepublic Map<String,String> writeXMLAttributes()
writeXMLAttributes in interface SBasewriteXMLAttributes in class AbstractSBaseCopyright © 2009–2016. All rights reserved.