org.sbml.jsbml.ext.multi

Class MultiSpecies

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.ext.AbstractSBasePlugin

org.sbml.jsbml.ext.multi.MultiSpecies

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, SBasePlugin, TreeNodeWithChangeSupport

public class MultiSpecies
extends AbstractSBasePlugin

Since:

1.0

Version:

$Rev$

Author:

Nicolas Rodriguez, Marine Dumousseau

See Also:

Serialized Form

Field Summary

Fields inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

extendedSBase, packageVersion

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS

Constructor Summary

Constructors

Constructor and Description
MultiSpecies(MultiSpecies multiSpecies)
MultiSpecies(Species species)

Method Summary

Modifier and Type	Method and Description
void	addSpeciesTypeInstance(SpeciesTypeInstance speciesTypeInstance)
MultiSpecies	clone()
SpeciesTypeInstance	createSpeciesTypeInstance(String id)
boolean	getAllowsChildren()
SBase	getChildAt(int childIndex)
int	getChildCount()
String	getElementNamespace()
SpeciesTypeInstance	getInitialSpeciesInstance(String id)
ListOf<SpeciesTypeInstance>	getListOfSpeciesTypeInstances()
String	getPackageName()
ListOf<Species>	getParent()
ListOf<Species>	getParentSBMLObject()
String	getPrefix()
SpeciesTypeInstance	getSpeciesTypeInstance(int n)
String	getURI()
boolean	isSetListOfSpeciesInstances()
boolean	readAttribute(String attributeName, String prefix, String value)
String	toString()
boolean	unsetListOfInitialSpeciesInstances() Removes the listOfSpeciesTypeInstances from this Model and notifies all registered instances of TreeNodeChangeListener.
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

equals, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getExtendedSBase, getLevel, getPackageVersion, getSBMLDocument, getVersion, hashCode, isSetExtendedSBase, removeFromParent, setExtendedSBase

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, notifyChildChange, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, isLeaf

Constructor Detail

MultiSpecies

public MultiSpecies(Species species)

Parameters:

species -

MultiSpecies

public MultiSpecies(MultiSpecies multiSpecies)

Parameters:

multiSpecies -

Method Detail

getElementNamespace

public String getElementNamespace()

getPackageName

public String getPackageName()

getPrefix

public String getPrefix()

getURI

public String getURI()

getParent

public ListOf<Species> getParent()

Specified by:

getParent in interface TreeNode

Overrides:

getParent in class AbstractTreeNode

getParentSBMLObject

public ListOf<Species> getParentSBMLObject()

Specified by:

getParentSBMLObject in interface SBasePlugin

Overrides:

getParentSBMLObject in class AbstractSBasePlugin

clone

public MultiSpecies clone()

Specified by:

clone in interface SBasePlugin

Overrides:

clone in class AbstractSBasePlugin

getAllowsChildren

public boolean getAllowsChildren()

getChildAt

public SBase getChildAt(int childIndex)

getChildCount

public int getChildCount()

addSpeciesTypeInstance

public void addSpeciesTypeInstance(SpeciesTypeInstance speciesTypeInstance)

Parameters:

speciesTypeInstance -

getSpeciesTypeInstance

public SpeciesTypeInstance getSpeciesTypeInstance(int n)

Parameters:

n -

Returns:

getInitialSpeciesInstance

public SpeciesTypeInstance getInitialSpeciesInstance(String id)

Parameters:

id -

Returns:

getListOfSpeciesTypeInstances

public ListOf<SpeciesTypeInstance> getListOfSpeciesTypeInstances()

Returns:

isSetListOfSpeciesInstances

public boolean isSetListOfSpeciesInstances()

Returns:

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

toString

public String toString()

Overrides:

toString in class AbstractTreeNode

unsetListOfInitialSpeciesInstances

public boolean unsetListOfInitialSpeciesInstances()

Removes the listOfSpeciesTypeInstances from this Model and notifies all registered instances of TreeNodeChangeListener.

Returns:

true if calling this method lead to a change in this data structure.

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface SBasePlugin

Overrides:

writeXMLAttributes in class AbstractSBasePlugin

createSpeciesTypeInstance

public SpeciesTypeInstance createSpeciesTypeInstance(String id)