public class SpeciesTypeInstance extends AbstractNamedSBase
ignoredExtensions, ignoredXMLElements, JSBML_WRONG_SBO_TERM, packageNamelistOfListeners, parent, resourceBundle| Constructor and Description |
|---|
SpeciesTypeInstance()
Creates an SpeciesTypeInstance instance
|
SpeciesTypeInstance(int level,
int version)
Creates a SpeciesTypeInstance instance with a level and version.
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SpeciesTypeInstance(SpeciesTypeInstance obj)
Clone constructor
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SpeciesTypeInstance(String id)
Creates a SpeciesTypeInstance instance with an id.
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SpeciesTypeInstance(String id,
int level,
int version)
Creates a SpeciesTypeInstance instance with an id, level, and version.
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SpeciesTypeInstance(String id,
String name,
int level,
int version)
Creates a SpeciesTypeInstance instance with an id, name, level, and version.
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| Modifier and Type | Method and Description |
|---|---|
SpeciesTypeInstance |
clone()
clones this class
|
String |
getCompartmentReference()
Returns the value of
compartmentReference. |
String |
getSpeciesType()
Returns the value of
speciesType. |
void |
initDefaults()
Initializes the default values using the namespace.
|
boolean |
isIdMandatory() |
boolean |
isSetCompartmentReference()
Returns whether
compartmentReference is set. |
boolean |
isSetSpeciesType()
Returns whether
speciesType is set. |
boolean |
readAttribute(String attributeName,
String prefix,
String value) |
void |
setCompartmentReference(String compartmentReference)
Sets the value of compartmentReference
|
void |
setSpeciesType(String speciesType)
Sets the value of speciesType
|
boolean |
unsetCompartmentReference()
Unsets the variable compartmentReference.
|
boolean |
unsetSpeciesType()
Unsets the variable speciesType.
|
Map<String,String> |
writeXMLAttributes() |
isValidIdaddCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkAttribute, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, equals, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAllowsChildren, getAnnotation, getAnnotationString, getChildAt, getChildCount, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getId, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hashCode, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTermaddAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, toString, userObjectKeySetfinalize, getClass, notify, notifyAll, wait, wait, waitgetId, getName, isSetId, isSetName, setId, setName, unsetId, unsetNameaddCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, equals, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hashCode, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeTreeNodeChangeListener, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTermaddAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySetchildren, getAllowsChildren, getChildAt, getChildCount, getIndex, getParent, isLeafpublic SpeciesTypeInstance()
public SpeciesTypeInstance(String id)
id - the identifier for the new element.public SpeciesTypeInstance(int level,
int version)
level - SBML Levelversion - SBML Versionpublic SpeciesTypeInstance(String id, int level, int version)
id - the identifier for this element.level - the SBML Levelversion - the SBML Versionpublic SpeciesTypeInstance(String id, String name, int level, int version)
id - the identifier for this element.name - a human-readable name for this element that can be used for display purposes.level - the SBML Levelversion - the SBML Versionpublic SpeciesTypeInstance(SpeciesTypeInstance obj)
public SpeciesTypeInstance clone()
clone in interface SBaseclone in class AbstractSBasepublic void initDefaults()
public boolean isIdMandatory()
isIdMandatory in interface NamedSBaseisIdMandatory in interface SBaseisIdMandatory in class AbstractSBasepublic String getSpeciesType()
speciesType.speciesType.public boolean isSetSpeciesType()
speciesType is set.speciesType is set.public void setSpeciesType(String speciesType)
speciesType - the value of speciesType to be set.public boolean unsetSpeciesType()
true if speciesType was set before, otherwise false.public String getCompartmentReference()
compartmentReference.compartmentReference.public boolean isSetCompartmentReference()
compartmentReference is set.compartmentReference is set.public void setCompartmentReference(String compartmentReference)
compartmentReference - the value of compartmentReference to be set.public boolean unsetCompartmentReference()
true if compartmentReference was set before, otherwise false.public Map<String,String> writeXMLAttributes()
writeXMLAttributes in interface SBasewriteXMLAttributes in class AbstractSBasepublic boolean readAttribute(String attributeName, String prefix, String value)
readAttribute in interface SBasereadAttribute in class AbstractSBaseCopyright © 2009–2016. All rights reserved.