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Class Summary Class Description BindingSiteSpeciesType CompartmentReference DenotedSpeciesTypeComponentIndex Class removed from the draft specs 1.0 release 0.5 (2015-11-27)InSpeciesTypeBond IntraSpeciesReaction MultiASTNodePlugin MultiCompartmentPlugin MultiConstants Contains some constants related to the multi package.MultiModelPlugin In order to encode the structures needed to define and use multistate and multi-component complexes, the element model is extended to be linked to a list ofSpeciesTypes.MultiSimpleSpeciesReferencePlugin MultiSpeciesPlugin MultiSpeciesReferencePlugin OutwardBindingSite PossibleSpeciesFeatureValue Each state feature (SpeciesFeatureType) also requires the definition of all the possible values it can take.SpeciesFeature SpeciesFeatureChange SpeciesFeatureType A species type (SpeciesType) can carry any number of features (SpeciesFeatureType), which are characteristic properties specific for this type of species (Species).SpeciesFeatureValue SpeciesType The element SpeciesType, which is part of SBML Level 2 Version 4 specification, is not part of SBML Level 3 Version 1 Core any more.SpeciesTypeComponentIndex SpeciesTypeComponentMapInProduct SpeciesTypeInstance -
Enum Summary Enum Description BindingStatus The BindingStatus enumeration is used in the definition of theOutwardBindingSiteclass.Relation The Relation enumeration is used in the definition of the ListOfSpeciesFeatures class.RepresentationType The RepresentationType enumeration is used in the extension of the ci element.
Package org.sbml.jsbml.ext.multi Description
Provides classes for the Multi package.
The current version implemented follow the proposal by Nicolas Le Novère and Anika Oellrich. There is only few classes from the proposal and it need to be completed.
- Since:
- 1.0
- Version:
- $Rev$