Package org.sbml.jsbml.ext.multi

Provides classes for the Multi package.

See: Description

Class Summary

Class	Description
BindingSiteSpeciesType
CompartmentReference
InSpeciesTypeBond	Defines a bond existing within a MultiSpeciesType.
IntraSpeciesReaction
MultiASTNodePlugin
MultiCompartmentPlugin
MultiConstants	Contains some constants related to the multi package.
MultiModelPlugin	In order to encode the structures needed to define and use multistate and multi-component complexes, the element model is extended to be linked to a list of MultiSpeciesTypes.
MultiSimpleSpeciesReferencePlugin
MultiSpeciesPlugin	A species in the Multi package is extended from a pool to a template or pattern which multiple pools may map to.
MultiSpeciesReferencePlugin
MultiSpeciesType	The element MultiSpeciesType, which is part of SBML Level 2 Version 4 specification, is not part of SBML Level 3 Version 1 Core any more.
OutwardBindingSite	A binding site not involved in any InSpeciesTypeBond object in the MultiSpeciesType referenced by a Species is an outwardBindingSite.
PossibleSpeciesFeatureValue	Each state feature (SpeciesFeatureType) also requires the definition of all the possible values it can take.
SpeciesFeature	Defines the state of a component in a species by selecting values from the listOfPossibleSpeciesFeatureValues of the referenced SpeciesFeatureType.
SpeciesFeatureChange
SpeciesFeatureType	A species type (MultiSpeciesType) can carry any number of features (SpeciesFeatureType), which are characteristic properties specific for this type of species (Species).
SpeciesFeatureValue
SpeciesTypeComponentIndex	Provides a way to identify or index a component within a MultiSpeciesType.
SpeciesTypeComponentMapInProduct	A speciesTypeComponentMapInProduct defines the mapping between a component in a reactant and a component in a product.
SpeciesTypeInstance	Provides a way to construct MultiSpeciesTypes and Species with multiple components.
SubListOfSpeciesFeature	Allows to regroup a set of SpeciesFeature that have a specific Relation between them.

Enum Summary

Enum	Description
BindingStatus	The BindingStatus enumeration is used in the definition of the OutwardBindingSite class.
Relation	The Relation enumeration is used in the definition of the ListOfSpeciesFeatures class.
RepresentationType	The RepresentationType enumeration is used in the extension of the ci element.

Package org.sbml.jsbml.ext.multi Description

Provides classes for the Multi package.

The current version implemented follow the proposal by Nicolas Le Novère and Anika Oellrich. There is only few classes from the proposal and it need to be completed.

Since:

1.0

Version:

$Rev$