public class IntraSpeciesReaction extends Reaction
ignoredExtensions, ignoredXMLElements, JSBML_WRONG_SBO_TERM, packageNamelistOfListeners, parent, resourceBundle| Constructor and Description |
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IntraSpeciesReaction()
Creates an IntraSpeciesReaction instance
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IntraSpeciesReaction(int level,
int version)
Creates a IntraSpeciesReaction instance with a level and version.
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IntraSpeciesReaction(IntraSpeciesReaction obj)
Clone constructor
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IntraSpeciesReaction(String id)
Creates a IntraSpeciesReaction instance with an id.
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IntraSpeciesReaction(String id,
int level,
int version)
Creates a IntraSpeciesReaction instance with an id, level, and version.
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IntraSpeciesReaction(String id,
String name,
int level,
int version)
Creates a IntraSpeciesReaction instance with an id, name, level, and version.
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| Modifier and Type | Method and Description |
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IntraSpeciesReaction |
clone()
clones this class
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void |
initDefaults()
Initializes the default values using the namespace.
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addModifier, addProduct, addReactant, containsUndeclaredUnits, createKineticLaw, createModifier, createModifier, createModifier, createModifier, createModifier, createProduct, createProduct, createProduct, createProduct, createProduct, createReactant, createReactant, createReactant, createReactant, createReactant, equals, getAllowsChildren, getChildAt, getChildCount, getCompartment, getCompartmentInstance, getDerivedUnitDefinition, getDerivedUnits, getFast, getKineticLaw, getListOfModifiers, getListOfProducts, getListOfReactants, getModifier, getModifier, getModifierCount, getModifierForSpecies, getNumModifiers, getNumProducts, getNumReactants, getParent, getProduct, getProduct, getProductCount, getProductForSpecies, getReactant, getReactant, getReactantCount, getReactantForSpecies, getReversible, hashCode, hasModifier, hasProduct, hasReactant, initDefaults, initDefaults, involves, isCompartmentMandatory, isFast, isIdMandatory, isListOfModifiersEmpty, isListOfProductsEmpty, isListOfReactantsEmpty, isReversible, isSetCompartment, isSetCompartmentInstance, isSetFast, isSetKineticLaw, isSetListOfModifiers, isSetListOfProducts, isSetListOfReactants, isSetReversible, readAttribute, removeModifier, removeModifier, removeModifier, removeProduct, removeProduct, removeProduct, removeReactant, removeReactant, removeReactant, setCompartment, setCompartment, setFast, setKineticLaw, setListOfModifiers, setListOfProducts, setListOfReactants, setReversible, unsetCompartment, unsetFast, unsetKineticLaw, unsetListOfModifiers, unsetListOfProducts, unsetListOfReactants, unsetReversible, writeXMLAttributesisValidIdaddCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkAttribute, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getId, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, toString, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTermaddAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isCloningInProgress, isInvalidSBMLAllowed, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySetfinalize, getClass, notify, notifyAll, wait, wait, waitgetId, getName, isSetId, isSetName, setId, setName, unsetId, unsetNameaddCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeTreeNodeChangeListener, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTermaddAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySetpublic IntraSpeciesReaction()
public IntraSpeciesReaction(String id)
id - the identifier for the new element.public IntraSpeciesReaction(int level,
int version)
level - SBML Levelversion - SBML Versionpublic IntraSpeciesReaction(String id, int level, int version)
id - the identifier for this element.level - the SBML Levelversion - the SBML Versionpublic IntraSpeciesReaction(String id, String name, int level, int version)
id - the identifier for this element.name - a human-readable name for this element that can be used for display purposes.level - the SBML Levelversion - the SBML Versionpublic IntraSpeciesReaction(IntraSpeciesReaction obj)
public IntraSpeciesReaction clone()
public void initDefaults()
initDefaults in class ReactionCopyright © 2009–2017. All rights reserved.