org.sbml.jsbml.ext.multi

Class SpeciesFeatureChange

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.AbstractNamedSBase

org.sbml.jsbml.ext.multi.SpeciesFeatureChange

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, NamedSBase, SBase, TreeNodeWithChangeSupport

public class SpeciesFeatureChange
extends AbstractNamedSBase

Since:

1.1

Author:

Nicolas Rodriguez

See Also:

Serialized Form

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, JSBML_WRONG_SBO_TERM, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle

Constructor Summary

Constructors

Constructor and Description
SpeciesFeatureChange() Creates an SpeciesFeatureChange instance
SpeciesFeatureChange(int level, int version) Creates a SpeciesFeatureChange instance with a level and version.
SpeciesFeatureChange(SpeciesFeatureChange obj) Clone constructor
SpeciesFeatureChange(String id) Creates a SpeciesFeatureChange instance with an id.
SpeciesFeatureChange(String id, int level, int version) Creates a SpeciesFeatureChange instance with an id, level, and version.
SpeciesFeatureChange(String id, String name, int level, int version) Creates a SpeciesFeatureChange instance with an id, name, level, and version.

Method Summary

Modifier and Type	Method and Description
SpeciesFeatureChange	clone() clones this class
boolean	equals(Object obj)
String	getProductSpeciesFeature() Returns the value of productSpeciesFeature.
String	getReactantSpeciesFeature() Returns the value of reactantSpeciesFeature.
int	hashCode()
void	initDefaults() Initializes the default values using the namespace.
boolean	isIdMandatory()
boolean	isSetProductSpeciesFeature() Returns whether productSpeciesFeature is set.
boolean	isSetReactantSpeciesFeature() Returns whether reactantSpeciesFeature is set.
boolean	readAttribute(String attributeName, String prefix, String value)
void	setProductSpeciesFeature(String productSpeciesFeature) Sets the value of productSpeciesFeature
void	setReactantSpeciesFeature(String reactantSpeciesFeature) Sets the value of reactantSpeciesFeature
boolean	unsetProductSpeciesFeature() Unsets the variable productSpeciesFeature.
boolean	unsetReactantSpeciesFeature() Unsets the variable reactantSpeciesFeature.
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.AbstractNamedSBase

isValidId

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkAttribute, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAllowsChildren, getAnnotation, getAnnotationString, getChildAt, getChildCount, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getId, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, toString, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isCloningInProgress, isInvalidSBMLAllowed, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.NamedSBase

getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName

Methods inherited from interface org.sbml.jsbml.SBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeTreeNodeChangeListener, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getAllowsChildren, getChildAt, getChildCount, getIndex, getParent, isLeaf

Constructor Detail

SpeciesFeatureChange

public SpeciesFeatureChange()

Creates an SpeciesFeatureChange instance

SpeciesFeatureChange

public SpeciesFeatureChange(String id)

Creates a SpeciesFeatureChange instance with an id.

Parameters:

id - the identifier for the new element.

SpeciesFeatureChange

public SpeciesFeatureChange(int level,
                            int version)

Creates a SpeciesFeatureChange instance with a level and version.

Parameters:

level - SBML Level

version - SBML Version

SpeciesFeatureChange

public SpeciesFeatureChange(String id,
                            int level,
                            int version)

Creates a SpeciesFeatureChange instance with an id, level, and version.

Parameters:

id - the identifier for this element.

level - the SBML Level

version - the SBML Version

SpeciesFeatureChange

public SpeciesFeatureChange(String id,
                            String name,
                            int level,
                            int version)

Creates a SpeciesFeatureChange instance with an id, name, level, and version.

Parameters:

id - the identifier for this element.

name - a human-readable name for this element that can be used for display purposes.

level - the SBML Level

version - the SBML Version

SpeciesFeatureChange

public SpeciesFeatureChange(SpeciesFeatureChange obj)

Clone constructor

Method Detail

clone

public SpeciesFeatureChange clone()

clones this class

Specified by:

clone in interface SBase

Overrides:

clone in class AbstractSBase

initDefaults

public void initDefaults()

Initializes the default values using the namespace.

isIdMandatory

public boolean isIdMandatory()

Specified by:

isIdMandatory in interface NamedSBase

Specified by:

isIdMandatory in interface SBase

Overrides:

isIdMandatory in class AbstractSBase

hashCode

public int hashCode()

Specified by:

hashCode in interface SBase

Overrides:

hashCode in class AbstractSBase

equals

public boolean equals(Object obj)

Specified by:

equals in interface SBase

Overrides:

equals in class AbstractSBase

getReactantSpeciesFeature

public String getReactantSpeciesFeature()

Returns the value of reactantSpeciesFeature.

Returns:

the value of reactantSpeciesFeature.

isSetReactantSpeciesFeature

public boolean isSetReactantSpeciesFeature()

Returns whether reactantSpeciesFeature is set.

Returns:

whether reactantSpeciesFeature is set.

setReactantSpeciesFeature

public void setReactantSpeciesFeature(String reactantSpeciesFeature)

Sets the value of reactantSpeciesFeature

Parameters:

reactantSpeciesFeature - the value of reactantSpeciesFeature to be set.

unsetReactantSpeciesFeature

public boolean unsetReactantSpeciesFeature()

Unsets the variable reactantSpeciesFeature.

Returns:

true if reactantSpeciesFeature was set before, otherwise false.

getProductSpeciesFeature

public String getProductSpeciesFeature()

Returns the value of productSpeciesFeature.

Returns:

the value of productSpeciesFeature.

isSetProductSpeciesFeature

public boolean isSetProductSpeciesFeature()

Returns whether productSpeciesFeature is set.

Returns:

whether productSpeciesFeature is set.

setProductSpeciesFeature

public void setProductSpeciesFeature(String productSpeciesFeature)

Sets the value of productSpeciesFeature

Parameters:

productSpeciesFeature - the value of productSpeciesFeature to be set.

unsetProductSpeciesFeature

public boolean unsetProductSpeciesFeature()

Unsets the variable productSpeciesFeature.

Returns:

true if productSpeciesFeature was set before, otherwise false.

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface SBase

Overrides:

writeXMLAttributes in class AbstractSBase

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface SBase

Overrides:

readAttribute in class AbstractSBase