| Package | Description |
|---|---|
| org.sbml.jsbml.ext.multi |
Provides classes for the Multi package.
|
| org.sbml.jsbml.validator.offline.constraints |
| Class and Description |
|---|
| BindingSiteSpeciesType |
| BindingStatus
The BindingStatus enumeration is used in the definition of the
OutwardBindingSite class. |
| CompartmentReference |
| InSpeciesTypeBond
Defines a bond existing within a
MultiSpeciesType. |
| IntraSpeciesReaction |
| MultiASTNodePlugin |
| MultiCompartmentPlugin |
| MultiModelPlugin
In order to encode the structures needed to define and use multistate and multi-component
complexes, the element model is extended to be linked to a list of
MultiSpeciesTypes. |
| MultiSimpleSpeciesReferencePlugin |
| MultiSpeciesPlugin
A species in the Multi package is extended from a pool to a
template or pattern which multiple pools may map to.
|
| MultiSpeciesReferencePlugin |
| MultiSpeciesType
The element MultiSpeciesType, which is part of SBML Level 2 Version 4 specification, is not part
of SBML Level 3 Version 1 Core any more.
|
| OutwardBindingSite
A binding site not involved in any
InSpeciesTypeBond object in the MultiSpeciesType referenced by a Species is
an outwardBindingSite. |
| PossibleSpeciesFeatureValue
Each state feature (
SpeciesFeatureType) also requires the definition of all
the possible values it can take. |
| Relation
The Relation enumeration is used in the definition of the ListOfSpeciesFeatures
class.
|
| RepresentationType
The RepresentationType enumeration is used in the extension of the ci element.
|
| SpeciesFeature
Defines the state of a component in a species by selecting values from
the listOfPossibleSpeciesFeatureValues of the referenced
SpeciesFeatureType. |
| SpeciesFeatureChange |
| SpeciesFeatureType
A species type (
MultiSpeciesType) can carry any number of features
(SpeciesFeatureType), which are characteristic properties specific
for this type of species (Species). |
| SpeciesFeatureValue |
| SpeciesTypeComponentIndex
Provides a way to identify or index a component within a
MultiSpeciesType. |
| SpeciesTypeComponentMapInProduct
A speciesTypeComponentMapInProduct defines the mapping between a component in a reactant and a component
in a product.
|
| SpeciesTypeInstance
Provides a way to construct
MultiSpeciesTypes and Species with multiple components. |
| SubListOfSpeciesFeature
Allows to regroup a set of
SpeciesFeature that have a specific Relation between them. |
| Class and Description |
|---|
| CompartmentReference |
| MultiCompartmentPlugin |
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