Package org.sbml.jsbml.ext.multi

Class OutwardBindingSite

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.ext.multi.OutwardBindingSite

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, javax.swing.tree.TreeNode, SBase, TreeNodeWithChangeSupport

public class OutwardBindingSite
extends AbstractSBase

A binding site not involved in any InSpeciesTypeBond object in the MultiSpeciesType referenced by a Species is an outwardBindingSite.

Since:

1.1

Author:

Nicolas Rodriguez

See Also:

Serialized Form

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, JSBML_WRONG_SBO_TERM, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle

Constructor Summary

Constructors

Constructor	Description
OutwardBindingSite()	Creates an OutwardBindingSite instance
OutwardBindingSite(int level, int version)	Creates a OutwardBindingSite instance with a level and version.
OutwardBindingSite(OutwardBindingSite obj)	Clone constructor

Method Summary

Modifier and Type	Method	Description
OutwardBindingSite	clone()	clones this class
boolean	equals(java.lang.Object obj)
BindingStatus	getBindingStatus()	Returns the value of bindingStatus.
java.lang.String	getComponent()	Returns the value of component.
int	hashCode()
void	initDefaults()	Initializes the default values using the namespace.
boolean	isSetBindingStatus()	Returns whether bindingStatus is set.
boolean	isSetComponent()	Returns whether component is set.
boolean	readAttribute(java.lang.String attributeName, java.lang.String prefix, java.lang.String value)
void	setBindingStatus(BindingStatus bindingStatus)	Sets the value of bindingStatus
void	setComponent(java.lang.String component)	Sets the value of component
boolean	unsetBindingStatus()	Unsets the variable bindingStatus.
boolean	unsetComponent()	Unsets the variable component.
java.util.Map<java.lang.String,java.lang.String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, addResources, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkAttribute, checkIdentifier, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAllDeclaredNamespaces, getAllowsChildren, getAnnotation, getAnnotationString, getChildAt, getChildCount, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getFirstElementIndex, getHistory, getId, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasExtension, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isIdMandatory, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, removeDeclaredNamespaceByNamespace, removeDeclaredNamespaceByPrefix, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, replaceTopLevelAnnotationElement, replaceTopLevelAnnotationElement, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, toString, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isCloningInProgress, isInvalidSBMLAllowed, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.SBase

removeTreeNodeChangeListener

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, isLeaf

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Constructor Detail

OutwardBindingSite

public OutwardBindingSite()

Creates an OutwardBindingSite instance

OutwardBindingSite

public OutwardBindingSite(int level,
                          int version)

Creates a OutwardBindingSite instance with a level and version.

Parameters:

level - SBML Level

version - SBML Version

OutwardBindingSite

public OutwardBindingSite(OutwardBindingSite obj)

Clone constructor

Method Detail

clone

public OutwardBindingSite clone()

clones this class

Specified by:

clone in interface SBase

Specified by:

clone in class AbstractSBase

initDefaults

public void initDefaults()

Initializes the default values using the namespace.

hashCode

public int hashCode()

Specified by:

hashCode in interface SBase

Overrides:

hashCode in class AbstractSBase

equals

public boolean equals(java.lang.Object obj)

Specified by:

equals in interface SBase

Overrides:

equals in class AbstractSBase

getBindingStatus

public BindingStatus getBindingStatus()

Returns the value of bindingStatus.

Returns:

the value of bindingStatus.

isSetBindingStatus

public boolean isSetBindingStatus()

Returns whether bindingStatus is set.

Returns:

whether bindingStatus is set.

setBindingStatus

public void setBindingStatus(BindingStatus bindingStatus)

Sets the value of bindingStatus

Parameters:

bindingStatus - the value of bindingStatus to be set.

unsetBindingStatus

public boolean unsetBindingStatus()

Unsets the variable bindingStatus.

Returns:

true if bindingStatus was set before, otherwise false.

getComponent

public java.lang.String getComponent()

Returns the value of component.

Returns:

the value of component.

isSetComponent

public boolean isSetComponent()

Returns whether component is set.

Returns:

whether component is set.

setComponent

public void setComponent(java.lang.String component)

Sets the value of component

Parameters:

component - the value of component to be set.

unsetComponent

public boolean unsetComponent()

Unsets the variable component.

Returns:

true if component was set before, otherwise false.

writeXMLAttributes

public java.util.Map<java.lang.String,java.lang.String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface SBase

Overrides:

writeXMLAttributes in class AbstractSBase

readAttribute

public boolean readAttribute(java.lang.String attributeName,
                             java.lang.String prefix,
                             java.lang.String value)

Specified by:

readAttribute in interface SBase

Overrides:

readAttribute in class AbstractSBase