org.sbml.jsbml.ext.render

Class Transformation

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.ext.render.Transformation

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, org.sbml.jsbml.SBase, org.sbml.jsbml.util.TreeNodeWithChangeSupport

Direct Known Subclasses:

Transformation2D

public class Transformation
extends org.sbml.jsbml.AbstractSBase

Since:

1.0

Version:

$Rev$

Author:

Eugen Netz, Alexander Diamantikos, Jakob Matthes, Jan Rudolph

See Also:

Serialized Form

Last modified:

08.05.2012

Field Summary

Fields

Modifier and Type	Field and Description
protected Double[]	transform

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS

Constructor Summary

Constructors

Constructor and Description
Transformation() Creates an Transformation instance
Transformation(int level, int version) Creates an Transformation instance
Transformation(Transformation obj) Clone constructor

Method Summary

Modifier and Type	Method and Description
Transformation	clone()
boolean	equals(Object obj)
int	hashCode()
void	initDefaults() Initializes the default values using the namespace.
boolean	readAttribute(String attributeName, String prefix, String value)
String	toString()
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAllowsChildren, getAnnotation, getAnnotationString, getChildAt, getChildCount, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.SBase

removeTreeNodeChangeListener

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, isLeaf

Field Detail

transform

protected Double[] transform

Constructor Detail

Transformation

public Transformation()

Creates an Transformation instance

Transformation

public Transformation(int level,
                      int version)

Creates an Transformation instance

Parameters:

level - the SBML level

version - the SBML version

Transformation

public Transformation(Transformation obj)

Clone constructor

Parameters:

obj -

Method Detail

clone

public Transformation clone()

Specified by:

clone in interface org.sbml.jsbml.SBase

Overrides:

clone in class org.sbml.jsbml.AbstractSBase

initDefaults

public void initDefaults()

Initializes the default values using the namespace.

hashCode

public int hashCode()

Specified by:

hashCode in interface org.sbml.jsbml.SBase

Overrides:

hashCode in class org.sbml.jsbml.AbstractSBase

equals

public boolean equals(Object obj)

Specified by:

equals in interface org.sbml.jsbml.SBase

Overrides:

equals in class org.sbml.jsbml.AbstractSBase

toString

public String toString()

Specified by:

toString in class org.sbml.jsbml.AbstractSBase

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface org.sbml.jsbml.SBase

Overrides:

writeXMLAttributes in class org.sbml.jsbml.AbstractSBase

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface org.sbml.jsbml.SBase

Overrides:

readAttribute in class org.sbml.jsbml.AbstractSBase