| Package | Description |
|---|---|
| org.sbml.jsbml.ext.render.director |
This package contains interfaces and classes to create an implementation
to create a graphical representation of the
Layout
of a SBML document. |
| Class and Description |
|---|
| AbstractSBGNnode |
| AbstractSBGNNodeWithCloneMarker |
| AssociationNode |
| Catalysis
interface all the different graphical representations for catalysis arcs have
to implement
|
| Compartment |
| Consumption
interface all the different graphical representations for consumption arcs
have to implement
|
| DissociationNode |
| Inhibition
interface all the different graphical representations for inhibition arcs
have to implement
|
| LayoutAlgorithm
Interface for defining an algorithm to create bounding boxes, dimensions and
points missing in the layout.
|
| LayoutBuilder
LayoutBuilder provides methods to build graphical representations for
all glyph types.
|
| LayoutFactory
Interface that defines methods to create and return the different types of
nodes and arcs.
|
| Macromolecule
interface all the different graphical representations for macromolecule nodes
have to implement
|
| Modulation
Interface for the SBGN specified modulation arc.
|
| NecessaryStimulation
Interface for the SBGN specified necessary stimulation arc.
|
| NucleicAcidFeature |
| OmittedProcessNode |
| PerturbingAgent |
| ProcessNode |
| Production
interface all the different graphical representations for production arcs
have to implement
|
| ReversibleConsumption
Interface for all reversible consumption processes.
|
| SBGNArc
interface for the different types of connecting arcs
consumption
reversible consumption
production
catalysis
inhibition
|
| SBGNNode
interface for the different types of entity pool nodes
unspecified entity
simple chemical
macromolecule
source/sink
|
| SBGNNodeWithCloneMarker |
| SBGNProcessNode
Interface for all SBGN specified process nodes.
|
| SimpleChemical
Abstract class that all the different graphical representations for simple
chemical nodes have to extend.
|
| SimpleLayoutAlgorithm.RelativePosition
Enumeration types (enums) for relative positions.
|
| SourceSink
Abstract class that all the different graphical representations for the empty
set sign have to implement
|
| Stimulation
Interface for the SBGN specified stimulation arc.
|
| UncertainProcessNode |
| UnspecifiedNode
Abstract class that all the different graphical representations for
unspecified entity pool nodes have to implement
|
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