| Package | Description |
|---|---|
| org.sbml.jsbml.ext.render.director |
This package contains interfaces and classes to create an implementation
to create a graphical representation of the
Layout
of a SBML document. |
| Class | Description |
|---|---|
| AbstractSBGNnode | |
| AbstractSBGNNodeWithCloneMarker | |
| AssociationNode | |
| Catalysis |
interface all the different graphical representations for catalysis arcs have
to implement
|
| Compartment | |
| Consumption |
interface all the different graphical representations for consumption arcs
have to implement
|
| DissociationNode | |
| Inhibition |
interface all the different graphical representations for inhibition arcs
have to implement
|
| LayoutAlgorithm |
Interface for defining an algorithm to create bounding boxes, dimensions and
points missing in the layout.
|
| LayoutBuilder |
LayoutBuilder provides methods to build graphical representations for
all glyph types.
|
| LayoutFactory |
Interface that defines methods to create and return the different types of
nodes and arcs.
|
| Macromolecule |
interface all the different graphical representations for macromolecule nodes
have to implement
|
| Modulation |
Interface for the SBGN specified modulation arc.
|
| NecessaryStimulation |
Interface for the SBGN specified necessary stimulation arc.
|
| NucleicAcidFeature | |
| OmittedProcessNode | |
| PerturbingAgent | |
| ProcessNode | |
| Production |
interface all the different graphical representations for production arcs
have to implement
|
| ReversibleConsumption |
Interface for all reversible consumption processes.
|
| SBGNArc |
interface for the different types of connecting arcs
consumption
reversible consumption
production
catalysis
inhibition
|
| SBGNNode |
interface for the different types of entity pool nodes
unspecified entity
simple chemical
macromolecule
source/sink
|
| SBGNNodeWithCloneMarker | |
| SBGNProcessNode |
Interface for all SBGN specified process nodes.
|
| SimpleChemical |
Abstract class that all the different graphical representations for simple
chemical nodes have to extend.
|
| SimpleLayoutAlgorithm.RelativePosition |
Enumeration types (enums) for relative positions.
|
| SourceSink |
Abstract class that all the different graphical representations for the empty
set sign have to implement
|
| Stimulation |
Interface for the SBGN specified stimulation arc.
|
| UncertainProcessNode | |
| UnspecifiedNode |
Abstract class that all the different graphical representations for
unspecified entity pool nodes have to implement
|
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