Serialized Form

Package org.sbml.jsbml.ext.req

Class org.sbml.jsbml.ext.req.ChangedMath extends AbstractNamedSBase implements Serializable

serialVersionUID:

2446721938903003641L

Serialized Fields

viableWithoutChange

Boolean viableWithoutChange

The viableWithoutChange attribute is required, and is of type boolean. The attribute should be used to indicate whether an interpreter that does not understand the package from the changedBy attribute would have an interpretable version of the mathematics for the given component in a model. This can be established using two criteria: “Complete” and “Workable”. Obviously, if the math being interpreted is incomplete, the viableWithoutChange attribute must be false. If the math is complete, then whether the solution is “workable” requires a judgment call on the part of the modeler: if the modeler feels that the alternative version makes sense in an alternative context, they may set the attribute value to true; conversely, if they feel that the resulting model component makes no sense, even if technically “complete”, then they should set the attribute value to false.

changedBy

String changedBy

The changedBy attribute is required, and is of type string. The attribute must be set to the namespace URI of the SBML Level 3 package that redefines or alters the mathematical semantics of the parent object. In other words, if the mathematical semantics of a given component C in a model is changed by the use of a Level 3 package P, then C can be given a ChangedMath child, and its attribute changedBy should be P's namespace URI.

Class org.sbml.jsbml.ext.req.ReqSBasePlugin extends AbstractSBasePlugin implements Serializable

serialVersionUID:

-8899476363934112466L

Serialized Fields

listOfChangedMaths

ListOf<T extends SBase> listOfChangedMaths