org.sbml.jsbml.ext.spatial

Class AbstractSpatialSBasePlugin

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.ext.AbstractSBasePlugin

org.sbml.jsbml.ext.spatial.AbstractSpatialSBasePlugin

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, org.sbml.jsbml.ext.SBasePlugin, org.sbml.jsbml.util.TreeNodeWithChangeSupport

Direct Known Subclasses:

SpatialCompartmentPlugin, SpatialModelPlugin, SpatialParameterPlugin, SpatialReactionPlugin, SpatialSpeciesPlugin

public abstract class AbstractSpatialSBasePlugin
extends org.sbml.jsbml.ext.AbstractSBasePlugin

Since:

1.0

Version:

$Rev$

Author:

Alex Thomas, Piero Dalle Pezze

See Also:

Serialized Form

Last modified:

Jan 22, 2014

Field Summary

Fields inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

elementNamespace, extendedSBase, packageVersion

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS

Constructor Summary

Constructors

Constructor and Description
AbstractSpatialSBasePlugin()
AbstractSpatialSBasePlugin(AbstractSpatialSBasePlugin plugin)
AbstractSpatialSBasePlugin(org.sbml.jsbml.SBase extendedSBase)

Method Summary

Modifier and Type	Method and Description
abstract AbstractSpatialSBasePlugin	clone()
org.sbml.jsbml.Model	getModel()
String	getPackageName()
org.sbml.jsbml.SBase	getParent()
org.sbml.jsbml.SBase	getParentSBMLObject()
String	getPrefix()
String	getURI()
void	initDefaults() Initializes the default values using the namespace.
boolean	readAttribute(String attributeName, String prefix, String value)
String	toString()
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

equals, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getElementNamespace, getExtendedSBase, getLevel, getPackageVersion, getSBMLDocument, getVersion, hashCode, isSetExtendedSBase, isSetPackageVersion, removeFromParent, setExtendedSBase, setNamespace, setPackageVersion

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, notifyChildChange, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getAllowsChildren, getChildAt, getChildCount, getIndex, isLeaf

Constructor Detail

AbstractSpatialSBasePlugin

public AbstractSpatialSBasePlugin()

AbstractSpatialSBasePlugin

public AbstractSpatialSBasePlugin(AbstractSpatialSBasePlugin plugin)

Parameters:

plugin -

AbstractSpatialSBasePlugin

public AbstractSpatialSBasePlugin(org.sbml.jsbml.SBase extendedSBase)

Parameters:

extendedSBase -

Method Detail

clone

public abstract AbstractSpatialSBasePlugin clone()

Specified by:

clone in interface org.sbml.jsbml.ext.SBasePlugin

Overrides:

clone in class org.sbml.jsbml.ext.AbstractSBasePlugin

initDefaults

public void initDefaults()

Initializes the default values using the namespace.

getParent

public org.sbml.jsbml.SBase getParent()

Specified by:

getParent in interface TreeNode

Overrides:

getParent in class org.sbml.jsbml.AbstractTreeNode

getParentSBMLObject

public org.sbml.jsbml.SBase getParentSBMLObject()

Specified by:

getParentSBMLObject in interface org.sbml.jsbml.ext.SBasePlugin

Overrides:

getParentSBMLObject in class org.sbml.jsbml.ext.AbstractSBasePlugin

getPackageName

public String getPackageName()

getPrefix

public String getPrefix()

getURI

public String getURI()

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface org.sbml.jsbml.ext.SBasePlugin

Overrides:

writeXMLAttributes in class org.sbml.jsbml.ext.AbstractSBasePlugin

getModel

public org.sbml.jsbml.Model getModel()

Returns:

toString

public String toString()

Overrides:

toString in class org.sbml.jsbml.AbstractTreeNode