org.sbml.jsbml.ext.spatial

Class CSGeometry

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase

org.sbml.jsbml.ext.spatial.GeometryDefinition

org.sbml.jsbml.ext.spatial.CSGeometry

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, SpatialNamedSBase, org.sbml.jsbml.SBase, org.sbml.jsbml.util.TreeNodeWithChangeSupport

public class CSGeometry
extends GeometryDefinition

Since:

1.0

Version:

$Rev$

Author:

Alex Thomas, Andreas Dräger

See Also:

Serialized Form

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS

Constructor Summary

Constructors

Constructor and Description
CSGeometry()
CSGeometry(CSGeometry csg)
CSGeometry(int level, int version)
CSGeometry(String id, int level, int version)

Method Summary

Modifier and Type	Method and Description
boolean	addCSGObject(CSGObject csgo) Adds a new CSGObject to the listOfCSGObjects.
CSGeometry	clone()
CSGObject	createCSGObject() Creates a new CSGObject element and adds it to the ListOfCSGObjects list
CSGObject	createCSGObject(String id) Creates a new CSGObject element and adds it to the ListOfCSGObjects list
boolean	equals(Object obj)
org.sbml.jsbml.ListOf<CSGObject>	getListOfCSGObjects() Returns the listOfCSGObjects.
int	hashCode()
boolean	isSetListOfCSGObjects() Returns true, if listOfCSGObjects contains at least one element.
boolean	removeCSGObject(CSGObject csgo) Removes an element from the listOfCSGObjects.
void	removeCSGObject(int i) Removes an element from the listOfCSGObjects at the given index.
void	setListOfCSGObjects(org.sbml.jsbml.ListOf<CSGObject> listOfCSGObjects) Sets the given ListOf<CSGObject>.
String	toString()
boolean	unsetListOfCSGObjects() Returns true, if listOfCSGObjects contain at least one element, otherwise false

Methods inherited from class org.sbml.jsbml.ext.spatial.GeometryDefinition

getIsActive, isActive, isSetIsActive, readAttribute, setIsActive, unsetIsActive, writeXMLAttributes

Methods inherited from class org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase

getAllowsChildren, getChildAt, getChildCount, getSpatialId, initDefaults, isSetSpatialId, setSpatialId, unsetSpatialId

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.SBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeTreeNodeChangeListener, setAnnotation, setAnnotation, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, getParent, isLeaf

Constructor Detail

CSGeometry

public CSGeometry()

CSGeometry

public CSGeometry(CSGeometry csg)

Parameters:

csg -

CSGeometry

public CSGeometry(int level,
                  int version)

Parameters:

level -

version -

CSGeometry

public CSGeometry(String id,
                  int level,
                  int version)

Parameters:

id -

level -

version -

Method Detail

clone

public CSGeometry clone()

Specified by:

clone in interface org.sbml.jsbml.SBase

Specified by:

clone in class AbstractSpatialNamedSBase

equals

public boolean equals(Object obj)

Specified by:

equals in interface org.sbml.jsbml.SBase

Overrides:

equals in class GeometryDefinition

isSetListOfCSGObjects

public boolean isSetListOfCSGObjects()

Returns true, if listOfCSGObjects contains at least one element.

Returns:

true, if listOfCSGObjects contains at least one element, otherwise false

getListOfCSGObjects

public org.sbml.jsbml.ListOf<CSGObject> getListOfCSGObjects()

Returns the listOfCSGObjects. Creates it if it is not already existing.

Returns:

the listOfCSGObjects

setListOfCSGObjects

public void setListOfCSGObjects(org.sbml.jsbml.ListOf<CSGObject> listOfCSGObjects)

Sets the given ListOf<CSGObject>. If listOfCSGObjects was defined before and contains some elements, they are all unset.

Parameters:

listOfCSGObjects -

unsetListOfCSGObjects

public boolean unsetListOfCSGObjects()

Returns true, if listOfCSGObjects contain at least one element, otherwise false

Returns:

true, if listOfCSGObjects contain at least one element, otherwise false

addCSGObject

public boolean addCSGObject(CSGObject csgo)

Adds a new CSGObject to the listOfCSGObjects.

The listOfCSGObjects is initialized if necessary.

Parameters:

csgo - the element to add to the list

Returns:

true (as specified by Collection.add(E))

removeCSGObject

public boolean removeCSGObject(CSGObject csgo)

Removes an element from the listOfCSGObjects.

Parameters:

csgo - the element to be removed from the list

Returns:

true if the list contained the specified element

See Also:

List.remove(Object)

removeCSGObject

public void removeCSGObject(int i)

Removes an element from the listOfCSGObjects at the given index.

Parameters:

i - the index where to remove the CSGObject

Throws:

IndexOutOfBoundsException - if the listOf is not set or if the index is out of bound (index < 0 || index > list.size).

createCSGObject

public CSGObject createCSGObject()

Creates a new CSGObject element and adds it to the ListOfCSGObjects list

Returns:

createCSGObject

public CSGObject createCSGObject(String id)

Creates a new CSGObject element and adds it to the ListOfCSGObjects list

Parameters:

id -

Returns:

a new CSGObject element

hashCode

public int hashCode()

Specified by:

hashCode in interface org.sbml.jsbml.SBase

Overrides:

hashCode in class GeometryDefinition

toString

public String toString()

Overrides:

toString in class GeometryDefinition