org.sbml.jsbml.ext.spatial

Class SpatialModelPlugin

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.ext.AbstractSBasePlugin

org.sbml.jsbml.ext.spatial.AbstractSpatialSBasePlugin

org.sbml.jsbml.ext.spatial.SpatialModelPlugin

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, org.sbml.jsbml.ext.SBasePlugin, org.sbml.jsbml.util.IdManager, org.sbml.jsbml.util.TreeNodeWithChangeSupport

public class SpatialModelPlugin
extends AbstractSpatialSBasePlugin
implements org.sbml.jsbml.util.IdManager

Since:

1.0

Version:

$Rev$

Author:

Alex Thomas

See Also:

Serialized Form

Last modified:

Dec 10, 2013

Field Summary

Fields inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

elementNamespace, extendedSBase, packageVersion

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS

Constructor Summary

Constructors

Constructor and Description
SpatialModelPlugin()
SpatialModelPlugin(org.sbml.jsbml.Model model)
SpatialModelPlugin(SpatialModelPlugin spatialModelPlugin)

Method Summary

Modifier and Type	Method and Description
boolean	accept(org.sbml.jsbml.SBase sbase)
SpatialModelPlugin	clone()
Geometry	createGeometry() Creates a new Geometry, adds it to this object and returns a pointer to it.
boolean	getAllowsChildren()
Geometry	getChildAt(int index)
int	getChildCount()
org.sbml.jsbml.Model	getExtendedSBase()
Geometry	getGeometry() Returns the value of geometry
int	hashCode()
boolean	isSetGeometry() Returns whether geometry is set
boolean	register(org.sbml.jsbml.SBase sbase)
void	setGeometry(Geometry geometry) Sets the value of geometry
String	toString()
boolean	unregister(org.sbml.jsbml.SBase sbase)
boolean	unsetGeometry() Unsets the variable geometry
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.ext.spatial.AbstractSpatialSBasePlugin

getModel, getPackageName, getParent, getParentSBMLObject, getPrefix, getURI, initDefaults, readAttribute

Methods inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

equals, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getElementNamespace, getLevel, getPackageVersion, getSBMLDocument, getVersion, isSetExtendedSBase, isSetPackageVersion, removeFromParent, setExtendedSBase, setNamespace, setPackageVersion

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, notifyChildChange, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, isLeaf

Constructor Detail

SpatialModelPlugin

public SpatialModelPlugin()

SpatialModelPlugin

public SpatialModelPlugin(org.sbml.jsbml.Model model)

Parameters:

model -

SpatialModelPlugin

public SpatialModelPlugin(SpatialModelPlugin spatialModelPlugin)

Parameters:

spatialModelPlugin -

Method Detail

getGeometry

public Geometry getGeometry()

Returns the value of geometry

Returns:

the value of geometry

createGeometry

public Geometry createGeometry()

Creates a new Geometry, adds it to this object and returns a pointer to it.

Returns:

a new Geometry object.

isSetGeometry

public boolean isSetGeometry()

Returns whether geometry is set

Returns:

whether geometry is set

setGeometry

public void setGeometry(Geometry geometry)

Sets the value of geometry

Parameters:

geometry -

unsetGeometry

public boolean unsetGeometry()

Unsets the variable geometry

Returns:

true, if geometry was set before, otherwise false

getExtendedSBase

public org.sbml.jsbml.Model getExtendedSBase()

Specified by:

getExtendedSBase in interface org.sbml.jsbml.ext.SBasePlugin

Overrides:

getExtendedSBase in class org.sbml.jsbml.ext.AbstractSBasePlugin

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface org.sbml.jsbml.ext.SBasePlugin

Overrides:

writeXMLAttributes in class AbstractSpatialSBasePlugin

getAllowsChildren

public boolean getAllowsChildren()

Specified by:

getAllowsChildren in interface TreeNode

getChildAt

public Geometry getChildAt(int index)

Specified by:

getChildAt in interface TreeNode

getChildCount

public int getChildCount()

Specified by:

getChildCount in interface TreeNode

clone

public SpatialModelPlugin clone()

Specified by:

clone in interface org.sbml.jsbml.ext.SBasePlugin

Specified by:

clone in class AbstractSpatialSBasePlugin

accept

public boolean accept(org.sbml.jsbml.SBase sbase)

Specified by:

accept in interface org.sbml.jsbml.util.IdManager

register

public boolean register(org.sbml.jsbml.SBase sbase)

Specified by:

register in interface org.sbml.jsbml.util.IdManager

unregister

public boolean unregister(org.sbml.jsbml.SBase sbase)

Specified by:

unregister in interface org.sbml.jsbml.util.IdManager

hashCode

public int hashCode()

Specified by:

hashCode in interface org.sbml.jsbml.ext.SBasePlugin

Overrides:

hashCode in class org.sbml.jsbml.ext.AbstractSBasePlugin

toString

public String toString()

Overrides:

toString in class AbstractSpatialSBasePlugin