org.sbml.jsbml.ext.spatial

Class SpatialSpeciesPlugin

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.ext.AbstractSBasePlugin

org.sbml.jsbml.ext.spatial.AbstractSpatialSBasePlugin

org.sbml.jsbml.ext.spatial.SpatialSpeciesPlugin

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, org.sbml.jsbml.ext.SBasePlugin, org.sbml.jsbml.util.TreeNodeWithChangeSupport

public class SpatialSpeciesPlugin
extends AbstractSpatialSBasePlugin

Since:

1.0

Version:

$Rev$

Author:

Alex Thomas, Andreas Dräger

See Also:

Serialized Form

Field Summary

Fields inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

elementNamespace, extendedSBase, packageVersion

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS

Constructor Summary

Constructors

Constructor and Description
SpatialSpeciesPlugin()
SpatialSpeciesPlugin(SpatialSpeciesPlugin sb)
SpatialSpeciesPlugin(org.sbml.jsbml.Species sp)

Method Summary

Modifier and Type	Method and Description
SpatialSpeciesPlugin	clone()
boolean	equals(Object object)
boolean	getAllowsChildren()
TreeNode	getChildAt(int childIndex)
int	getChildCount()
org.sbml.jsbml.Species	getExtendedSBase()
boolean	getSpatial()
int	hashCode()
boolean	isSetSpatial()
boolean	isSpatial()
boolean	readAttribute(String attributeName, String prefix, String value)
void	setSpatial(boolean isSpatial)
String	toString()
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.ext.spatial.AbstractSpatialSBasePlugin

getModel, getPackageName, getParent, getParentSBMLObject, getPrefix, getURI, initDefaults

Methods inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getElementNamespace, getLevel, getPackageVersion, getSBMLDocument, getVersion, isSetExtendedSBase, isSetPackageVersion, removeFromParent, setExtendedSBase, setNamespace, setPackageVersion

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, notifyChildChange, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, isLeaf

Constructor Detail

SpatialSpeciesPlugin

public SpatialSpeciesPlugin()

SpatialSpeciesPlugin

public SpatialSpeciesPlugin(org.sbml.jsbml.Species sp)

Parameters:

sp -

SpatialSpeciesPlugin

public SpatialSpeciesPlugin(SpatialSpeciesPlugin sb)

Parameters:

sb -

Method Detail

clone

public SpatialSpeciesPlugin clone()

Specified by:

clone in interface org.sbml.jsbml.ext.SBasePlugin

Specified by:

clone in class AbstractSpatialSBasePlugin

getExtendedSBase

public org.sbml.jsbml.Species getExtendedSBase()

Specified by:

getExtendedSBase in interface org.sbml.jsbml.ext.SBasePlugin

Overrides:

getExtendedSBase in class org.sbml.jsbml.ext.AbstractSBasePlugin

getSpatial

public boolean getSpatial()

Returns:

the isSpatial

hashCode

public int hashCode()

Specified by:

hashCode in interface org.sbml.jsbml.ext.SBasePlugin

Overrides:

hashCode in class org.sbml.jsbml.ext.AbstractSBasePlugin

toString

public String toString()

Overrides:

toString in class AbstractSpatialSBasePlugin

isSetSpatial

public boolean isSetSpatial()

Returns:

isSpatial

public boolean isSpatial()

Returns:

See Also:

getSpatial()

setSpatial

public void setSpatial(boolean isSpatial)

Parameters:

isSpatial - the isSpatial to set

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface org.sbml.jsbml.ext.SBasePlugin

Overrides:

readAttribute in class AbstractSpatialSBasePlugin

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface org.sbml.jsbml.ext.SBasePlugin

Overrides:

writeXMLAttributes in class AbstractSpatialSBasePlugin

getAllowsChildren

public boolean getAllowsChildren()

getChildAt

public TreeNode getChildAt(int childIndex)

getChildCount

public int getChildCount()

equals

public boolean equals(Object object)

Specified by:

equals in interface org.sbml.jsbml.ext.SBasePlugin

Overrides:

equals in class org.sbml.jsbml.ext.AbstractSBasePlugin