org.sbml.jsbml.ext.spatial

Class AnalyticVolume

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.AbstractMathContainer

org.sbml.jsbml.ext.spatial.AnalyticVolume

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, SpatialNamedSBase, MathContainer, SBase, SBaseWithDerivedUnit, TreeNodeWithChangeSupport

public class AnalyticVolume
extends AbstractMathContainer
implements SpatialNamedSBase

Since:

1.0

Version:

$Rev$

Author:

Alex Thomas, Andreas Dräger, Piero Dalle Pezze

See Also:

Serialized Form

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, JSBML_WRONG_SBO_TERM, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle

Constructor Summary

Constructors

Constructor and Description
AnalyticVolume()
AnalyticVolume(AnalyticVolume node)
AnalyticVolume(String id, int level, int version)

Method Summary

Modifier and Type	Method and Description
AnalyticVolume	clone()
boolean	equals(Object object)
String	getDomainType() Returns the value of domainType
FunctionKind	getFunctionType() Returns the value of functionType
Integer	getOrdinal() Returns the value of ordinal
String	getSpatialId() Returns the value of spatialId
int	hashCode()
void	initDefaults() Initializes the default values using the namespace.
boolean	isSetDomainType() Returns whether domainType is set
boolean	isSetFunctionType() Returns whether functionType is set
boolean	isSetOrdinal() Returns whether ordinal is set
boolean	isSetSpatialId() Returns whether spatialId is set
boolean	readAttribute(String attributeName, String prefix, String value)
void	setDomainType(String domainType) Sets the value of domainType
void	setFunctionType(FunctionKind functionType) Sets the value of functionType
void	setOrdinal(int ordinal) Sets the value of ordinal
void	setSpatialId(String spatialId) Sets the value of spatialId
boolean	unsetDomainType() Unsets the variable domainType
boolean	unsetFunctionType() Unsets the variable functionType
boolean	unsetOrdinal() Unsets the variable ordinal
boolean	unsetSpatialId() Unsets the variable spatialId
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.AbstractMathContainer

containsUndeclaredUnits, getAllowsChildren, getChildAt, getChildCount, getDerivedUnitDefinition, getDerivedUnits, getFormula, getMath, getMathMLString, isSetMath, setFormula, setMath, unsetFormula, unsetMath

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkAttribute, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getId, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isIdMandatory, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, toString, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.SBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getId, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isIdMandatory, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeTreeNodeChangeListener, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getAllowsChildren, getChildAt, getChildCount, getIndex, getParent, isLeaf

Constructor Detail

AnalyticVolume

public AnalyticVolume()

AnalyticVolume

public AnalyticVolume(AnalyticVolume node)

Parameters:

node -

AnalyticVolume

public AnalyticVolume(String id,
                      int level,
                      int version)

Parameters:

id -

level -

version -

Method Detail

initDefaults

public void initDefaults()

Initializes the default values using the namespace.

clone

public AnalyticVolume clone()

Specified by:

clone in interface SBase

Overrides:

clone in class AbstractMathContainer

equals

public boolean equals(Object object)

Specified by:

equals in interface SBase

Overrides:

equals in class AbstractSBase

getFunctionType

public FunctionKind getFunctionType()

Returns the value of functionType

Returns:

the value of functionType

isSetFunctionType

public boolean isSetFunctionType()

Returns whether functionType is set

Returns:

whether functionType is set

setFunctionType

public void setFunctionType(FunctionKind functionType)

Sets the value of functionType

Parameters:

functionType -

unsetFunctionType

public boolean unsetFunctionType()

Unsets the variable functionType

Returns:

true, if functionType was set before, otherwise false

getDomainType

public String getDomainType()

Returns the value of domainType

Returns:

the value of domainType

isSetDomainType

public boolean isSetDomainType()

Returns whether domainType is set

Returns:

whether domainType is set

setDomainType

public void setDomainType(String domainType)

Sets the value of domainType

Parameters:

domainType -

unsetDomainType

public boolean unsetDomainType()

Unsets the variable domainType

Returns:

true, if domainType was set before, otherwise false

getOrdinal

public Integer getOrdinal()

Returns the value of ordinal

Returns:

the value of ordinal

isSetOrdinal

public boolean isSetOrdinal()

Returns whether ordinal is set

Returns:

whether ordinal is set

setOrdinal

public void setOrdinal(int ordinal)

Sets the value of ordinal

Parameters:

ordinal -

unsetOrdinal

public boolean unsetOrdinal()

Unsets the variable ordinal

Returns:

true, if ordinal was set before, otherwise false

unsetSpatialId

public boolean unsetSpatialId()

Description copied from interface: SpatialNamedSBase

Unsets the variable spatialId

Specified by:

unsetSpatialId in interface SpatialNamedSBase

Returns:

true, if spatialId was set before, otherwise false

setSpatialId

public void setSpatialId(String spatialId)

Description copied from interface: SpatialNamedSBase

Sets the value of spatialId

Specified by:

setSpatialId in interface SpatialNamedSBase

isSetSpatialId

public boolean isSetSpatialId()

Description copied from interface: SpatialNamedSBase

Returns whether spatialId is set

Specified by:

isSetSpatialId in interface SpatialNamedSBase

Returns:

whether spatialId is set

getSpatialId

public String getSpatialId()

Description copied from interface: SpatialNamedSBase

Returns the value of spatialId

Specified by:

getSpatialId in interface SpatialNamedSBase

Returns:

the value of spatialId

hashCode

public int hashCode()

Specified by:

hashCode in interface SBase

Overrides:

hashCode in class AbstractSBase

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface SBase

Overrides:

writeXMLAttributes in class AbstractMathContainer

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface SBase

Overrides:

readAttribute in class AbstractMathContainer