org.sbml.jsbml.ext.spatial

Class CSGObject

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase

org.sbml.jsbml.ext.spatial.CSGObject

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, SpatialNamedSBase, SBase, TreeNodeWithChangeSupport

public class CSGObject
extends AbstractSpatialNamedSBase

Since:

1.0

Version:

$Rev$

Author:

Alex Thomas, Andreas Dräger

See Also:

Serialized Form

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, JSBML_WRONG_SBO_TERM, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle

Constructor Summary

Constructors

Constructor and Description
CSGObject()
CSGObject(CSGObject csgo)
CSGObject(int level, int version)
CSGObject(String id, int level, int version)

Method Summary

Modifier and Type	Method and Description
CSGObject	clone()
boolean	equals(Object object)
boolean	getAllowsChildren()
TreeNode	getChildAt(int index)
int	getChildCount()
CSGNode	getCSGNode() Returns the value of csgNode
String	getDomainType() Returns the value of domainType
String	getElementName()
Integer	getOrdinal() Returns the value of ordinal
int	hashCode()
boolean	isSetCSGNode() Returns whether csgNode is set
boolean	isSetDomainType() Returns whether domainType is set
boolean	isSetOrdinal() Returns whether ordinal is set
boolean	readAttribute(String attributeName, String prefix, String value)
void	setCSGNode(CSGNode csgNode) Sets the value of csgNode
void	setDomainType(String domainType) Sets the value of domainType
void	setOrdinal(int ordinal) Sets the value of ordinal
boolean	unsetCSGNode() Unsets the variable csgNode
boolean	unsetDomainType() Unsets the variable domainType
boolean	unsetOrdinal() Unsets the variable ordinal
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase

getSpatialId, initDefaults, isSetSpatialId, setSpatialId, unsetSpatialId

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkAttribute, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getExtension, getExtensionCount, getExtensionPackages, getHistory, getId, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isIdMandatory, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, toString, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.SBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getExtension, getExtensionCount, getExtensionPackages, getHistory, getId, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isIdMandatory, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeTreeNodeChangeListener, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNotes, setNotes, setPackageVersion, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, getParent, isLeaf

Constructor Detail

CSGObject

public CSGObject()

CSGObject

public CSGObject(CSGObject csgo)

Parameters:

csgo -

CSGObject

public CSGObject(int level,
                 int version)

Parameters:

level -

version -

CSGObject

public CSGObject(String id,
                 int level,
                 int version)

Parameters:

id -

level -

version -

Method Detail

clone

public CSGObject clone()

Specified by:

clone in interface SBase

Specified by:

clone in class AbstractSpatialNamedSBase

equals

public boolean equals(Object object)

Specified by:

equals in interface SBase

Overrides:

equals in class AbstractSpatialNamedSBase

getDomainType

public String getDomainType()

Returns the value of domainType

Returns:

the value of domainType

isSetDomainType

public boolean isSetDomainType()

Returns whether domainType is set

Returns:

whether domainType is set

setDomainType

public void setDomainType(String domainType)

Sets the value of domainType

Parameters:

domainType -

unsetDomainType

public boolean unsetDomainType()

Unsets the variable domainType

Returns:

true, if domainType was set before, otherwise false

getOrdinal

public Integer getOrdinal()

Returns the value of ordinal

Returns:

the value of ordinal

isSetOrdinal

public boolean isSetOrdinal()

Returns whether ordinal is set

Returns:

whether ordinal is set

setOrdinal

public void setOrdinal(int ordinal)

Sets the value of ordinal

Parameters:

ordinal -

unsetOrdinal

public boolean unsetOrdinal()

Unsets the variable ordinal

Returns:

true, if ordinal was set before, otherwise false

getCSGNode

public CSGNode getCSGNode()

Returns the value of csgNode

Returns:

the value of csgNode

isSetCSGNode

public boolean isSetCSGNode()

Returns whether csgNode is set

Returns:

whether csgNode is set

setCSGNode

public void setCSGNode(CSGNode csgNode)

Sets the value of csgNode

Parameters:

csgNode -

unsetCSGNode

public boolean unsetCSGNode()

Unsets the variable csgNode

Returns:

true, if csgNode was set before, otherwise false

hashCode

public int hashCode()

Specified by:

hashCode in interface SBase

Overrides:

hashCode in class AbstractSpatialNamedSBase

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface SBase

Overrides:

writeXMLAttributes in class AbstractSpatialNamedSBase

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface SBase

Overrides:

readAttribute in class AbstractSpatialNamedSBase

getAllowsChildren

public boolean getAllowsChildren()

Specified by:

getAllowsChildren in interface TreeNode

Overrides:

getAllowsChildren in class AbstractSpatialNamedSBase

getChildCount

public int getChildCount()

Specified by:

getChildCount in interface TreeNode

Overrides:

getChildCount in class AbstractSpatialNamedSBase

getChildAt

public TreeNode getChildAt(int index)

Specified by:

getChildAt in interface TreeNode

Overrides:

getChildAt in class AbstractSpatialNamedSBase

getElementName

public String getElementName()

Specified by:

getElementName in interface SBase

Overrides:

getElementName in class AbstractSBase