org.sbml.jsbml.ext.spatial

Class DiffusionCoefficient

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.ext.spatial.ParameterType

org.sbml.jsbml.ext.spatial.DiffusionCoefficient

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, SBase, TreeNodeWithChangeSupport

public class DiffusionCoefficient
extends ParameterType

Since:

1.0

Version:

$Rev$

Author:

Alex Thomas, Andreas Dräger

See Also:

Serialized Form

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, JSBML_WRONG_SBO_TERM, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle

Constructor Summary

Constructors

Constructor and Description
DiffusionCoefficient()
DiffusionCoefficient(DiffusionCoefficient diffCoeff)
DiffusionCoefficient(int level, int version)
DiffusionCoefficient(String id, int level, int version)

Method Summary

Modifier and Type	Method and Description
DiffusionCoefficient	clone()
boolean	equals(Object object)
CoordinateKind	getCoordinateReference1() Returns the value of coordinateReference1
CoordinateKind	getCoordinateReference2() Returns the value of coordinateReference2
DiffusionKind	getDiffusionKind() Returns the value of diffusionKind
int	hashCode()
boolean	isSetCoordinateReference1() Returns whether coordinateReference1 is set
boolean	isSetCoordinateReference2() Returns whether coordinateReference2 is set
boolean	isSetDiffusionKind() Returns whether diffusionKind is set
boolean	readAttribute(String attributeName, String prefix, String value)
void	setCoordinateReference1(CoordinateKind coordinateReference1) Sets the value of coordinateReference1
void	setCoordinateReference2(CoordinateKind coordinateReference2) Sets the value of coordinateReference2
void	setDiffusionKind(DiffusionKind diffusionKind) Sets the value of diffusionKind
boolean	unsetCoordinateReference1() Unsets the variable coordinateReference1
boolean	unsetCoordinateReference2() Unsets the variable coordinateReference2
boolean	unsetDiffusionKind() Unsets the variable diffusionKind
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.ext.spatial.ParameterType

getAllowsChildren, getChildAt, getChildCount, getGeometryInstance, getSpeciesInstance, getSpeciesReference, getSpId, getVariable, getVariableInstance, initDefaults, isSetSpatialRef, isSetSpeciesReference, isSetSpId, isSetVariable, setSpeciesReference, setSpId, setVariable

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkAttribute, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getId, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isIdMandatory, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, toString, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.SBase

removeTreeNodeChangeListener

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, isLeaf

Constructor Detail

DiffusionCoefficient

public DiffusionCoefficient()

DiffusionCoefficient

public DiffusionCoefficient(DiffusionCoefficient diffCoeff)

Parameters:

diffCoeff -

DiffusionCoefficient

public DiffusionCoefficient(int level,
                            int version)

Parameters:

level -

version -

DiffusionCoefficient

public DiffusionCoefficient(String id,
                            int level,
                            int version)

Parameters:

id -

level -

version -

Method Detail

clone

public DiffusionCoefficient clone()

Specified by:

clone in interface SBase

Overrides:

clone in class ParameterType

equals

public boolean equals(Object object)

Specified by:

equals in interface SBase

Overrides:

equals in class ParameterType

getCoordinateReference1

public CoordinateKind getCoordinateReference1()

Returns the value of coordinateReference1

Returns:

the value of coordinateReference1

isSetCoordinateReference1

public boolean isSetCoordinateReference1()

Returns whether coordinateReference1 is set

Returns:

whether coordinateReference1 is set

setCoordinateReference1

public void setCoordinateReference1(CoordinateKind coordinateReference1)

Sets the value of coordinateReference1

Parameters:

coordinateReference1 -

unsetCoordinateReference1

public boolean unsetCoordinateReference1()

Unsets the variable coordinateReference1

Returns:

true, if coordinateReference1 was set before, otherwise false

getCoordinateReference2

public CoordinateKind getCoordinateReference2()

Returns the value of coordinateReference2

Returns:

the value of coordinateReference2

isSetCoordinateReference2

public boolean isSetCoordinateReference2()

Returns whether coordinateReference2 is set

Returns:

whether coordinateReference2 is set

setCoordinateReference2

public void setCoordinateReference2(CoordinateKind coordinateReference2)

Sets the value of coordinateReference2

Parameters:

coordinateReference2 -

unsetCoordinateReference2

public boolean unsetCoordinateReference2()

Unsets the variable coordinateReference2

Returns:

true, if coordinateReference2 was set before, otherwise false

getDiffusionKind

public DiffusionKind getDiffusionKind()

Returns the value of diffusionKind

Returns:

the value of diffusionKind

isSetDiffusionKind

public boolean isSetDiffusionKind()

Returns whether diffusionKind is set

Returns:

whether diffusionKind is set

setDiffusionKind

public void setDiffusionKind(DiffusionKind diffusionKind)

Sets the value of diffusionKind

Parameters:

diffusionKind -

unsetDiffusionKind

public boolean unsetDiffusionKind()

Unsets the variable diffusionKind

Returns:

true, if diffusionKind was set before, otherwise false

hashCode

public int hashCode()

Specified by:

hashCode in interface SBase

Overrides:

hashCode in class ParameterType

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface SBase

Overrides:

writeXMLAttributes in class ParameterType

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface SBase

Overrides:

readAttribute in class ParameterType