org.sbml.jsbml.ext.spatial

Class ParameterType

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.ext.spatial.ParameterType

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, SBase, TreeNodeWithChangeSupport

Direct Known Subclasses:

AdvectionCoefficient, BoundaryCondition, DiffusionCoefficient, SpatialSymbolReference

public class ParameterType
extends AbstractSBase

Since:

1.0

Version:

$Rev$

Author:

Alex Thomas, Andreas Dräger

See Also:

Serialized Form

Last modified:

09.09.2011

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, JSBML_WRONG_SBO_TERM, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle

Constructor Summary

Constructors

Constructor and Description
ParameterType()
ParameterType(int level, int version)
ParameterType(ParameterType ref)

Method Summary

Modifier and Type	Method and Description
ParameterType	clone()
boolean	equals(Object object)
boolean	getAllowsChildren()
TreeNode	getChildAt(int childIndex)
int	getChildCount()
Geometry	getGeometryInstance()
Species	getSpeciesInstance()
String	getSpeciesReference()
String	getSpId()
String	getVariable()
Species	getVariableInstance()
int	hashCode()
void	initDefaults() Initializes the default values using the namespace.
boolean	isSetSpatialRef()
boolean	isSetSpeciesReference()
boolean	isSetSpId()
boolean	isSetVariable()
boolean	readAttribute(String attributeName, String prefix, String value)
void	setSpeciesReference(String speciesRef)
void	setSpId(String spId)
void	setVariable(String speciesRef)
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkAttribute, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getId, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isIdMandatory, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, toString, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.SBase

removeTreeNodeChangeListener

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, isLeaf

Constructor Detail

ParameterType

public ParameterType()

ParameterType

public ParameterType(int level,
                     int version)

Parameters:

level -

version -

ParameterType

public ParameterType(ParameterType ref)

Parameters:

ref -

Method Detail

initDefaults

public void initDefaults()

Initializes the default values using the namespace.

getSpeciesInstance

public Species getSpeciesInstance()

Returns:

getVariableInstance

public Species getVariableInstance()

Returns:

getGeometryInstance

public Geometry getGeometryInstance()

Returns:

getSpId

public String getSpId()

Returns:

the variable

getSpeciesReference

public String getSpeciesReference()

Returns:

getVariable

public String getVariable()

Returns:

isSetSpeciesReference

public boolean isSetSpeciesReference()

Returns:

isSetVariable

public boolean isSetVariable()

Returns:

isSetSpId

public boolean isSetSpId()

Returns:

isSetSpatialRef

public boolean isSetSpatialRef()

Returns:

setSpId

public void setSpId(String spId)

Parameters:

spId - the variable to set

setSpeciesReference

public void setSpeciesReference(String speciesRef)

Parameters:

speciesRef -

setVariable

public void setVariable(String speciesRef)

Parameters:

speciesRef -

clone

public ParameterType clone()

Specified by:

clone in interface SBase

Overrides:

clone in class AbstractSBase

getAllowsChildren

public boolean getAllowsChildren()

Specified by:

getAllowsChildren in interface TreeNode

Overrides:

getAllowsChildren in class AbstractSBase

getChildAt

public TreeNode getChildAt(int childIndex)

Specified by:

getChildAt in interface TreeNode

Overrides:

getChildAt in class AbstractSBase

getChildCount

public int getChildCount()

Specified by:

getChildCount in interface TreeNode

Overrides:

getChildCount in class AbstractSBase

equals

public boolean equals(Object object)

Specified by:

equals in interface SBase

Overrides:

equals in class AbstractSBase

hashCode

public int hashCode()

Specified by:

hashCode in interface SBase

Overrides:

hashCode in class AbstractSBase

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface SBase

Overrides:

writeXMLAttributes in class AbstractSBase

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface SBase

Overrides:

readAttribute in class AbstractSBase