org.sbml.jsbml.ext.spatial

Class SpatialReactionPlugin

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.ext.AbstractSBasePlugin

org.sbml.jsbml.ext.spatial.AbstractSpatialSBasePlugin

org.sbml.jsbml.ext.spatial.SpatialReactionPlugin

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, SBasePlugin, TreeNodeWithChangeSupport

public class SpatialReactionPlugin
extends AbstractSpatialSBasePlugin

Since:

1.0

Version:

$Rev$

Author:

Alex Thomas, Andreas Dräger, Piero Dalle Pezze

See Also:

Serialized Form

Field Summary

Fields inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

elementNamespace, extendedSBase, packageVersion

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle

Constructor Summary

Constructors

Constructor and Description
SpatialReactionPlugin()
SpatialReactionPlugin(Reaction rxn)
SpatialReactionPlugin(SpatialReactionPlugin spr)

Method Summary

Modifier and Type	Method and Description
SpatialReactionPlugin	clone()
boolean	equals(Object object)
boolean	getAllowsChildren()
TreeNode	getChildAt(int index)
int	getChildCount()
Reaction	getExtendedSBase()
boolean	getIsLocal() Returns the value of isLocal
int	hashCode()
boolean	isLocal()
boolean	isSetIsLocal() Returns whether isLocal is set
boolean	readAttribute(String attributeName, String prefix, String value)
void	setIsLocal(boolean isLocal) Sets the value of isLocal
boolean	unsetIsLocal() Unsets the variable isLocal
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.ext.spatial.AbstractSpatialSBasePlugin

getModel, getPackageName, getParent, getParentSBMLObject, getPrefix, getURI, initDefaults

Methods inherited from class org.sbml.jsbml.ext.AbstractSBasePlugin

fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getElementNamespace, getLevel, getPackageVersion, getSBMLDocument, getVersion, isSetExtendedSBase, isSetPackageVersion, removeFromParent, setExtendedSBase, setNamespace, setPackageVersion

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, notifyChildChange, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, toString, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, isLeaf

Constructor Detail

SpatialReactionPlugin

public SpatialReactionPlugin()

SpatialReactionPlugin

public SpatialReactionPlugin(Reaction rxn)

Parameters:

rxn -

SpatialReactionPlugin

public SpatialReactionPlugin(SpatialReactionPlugin spr)

Parameters:

spr -

Method Detail

clone

public SpatialReactionPlugin clone()

Specified by:

clone in interface SBasePlugin

Specified by:

clone in class AbstractSpatialSBasePlugin

equals

public boolean equals(Object object)

Specified by:

equals in interface SBasePlugin

Overrides:

equals in class AbstractSBasePlugin

getExtendedSBase

public Reaction getExtendedSBase()

Specified by:

getExtendedSBase in interface SBasePlugin

Overrides:

getExtendedSBase in class AbstractSBasePlugin

getIsLocal

public boolean getIsLocal()

Returns the value of isLocal

Returns:

the value of isLocal

isSetIsLocal

public boolean isSetIsLocal()

Returns whether isLocal is set

Returns:

whether isLocal is set

isLocal

public boolean isLocal()

Returns:

setIsLocal

public void setIsLocal(boolean isLocal)

Sets the value of isLocal

Parameters:

isLocal -

unsetIsLocal

public boolean unsetIsLocal()

Unsets the variable isLocal

Returns:

true, if isLocal was set before, otherwise false

getAllowsChildren

public boolean getAllowsChildren()

getChildCount

public int getChildCount()

getChildAt

public TreeNode getChildAt(int index)

hashCode

public int hashCode()

Specified by:

hashCode in interface SBasePlugin

Overrides:

hashCode in class AbstractSBasePlugin

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface SBasePlugin

Overrides:

writeXMLAttributes in class AbstractSpatialSBasePlugin

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface SBasePlugin

Overrides:

readAttribute in class AbstractSpatialSBasePlugin