org.sbml.jsbml.ext.spatial

Class SpatialSymbolReference

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.ext.spatial.ParameterType

org.sbml.jsbml.ext.spatial.SpatialSymbolReference

All Implemented Interfaces:

Serializable, Cloneable, TreeNode, SBase, TreeNodeWithChangeSupport

public class SpatialSymbolReference
extends ParameterType

Since:

1.0

Version:

$Rev$

Author:

Alex Thomas, Andreas Dräger

See Also:

Serialized Form

Field Summary

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, JSBML_WRONG_SBO_TERM, packageName

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, resourceBundle

Constructor Summary

Constructors

Constructor and Description
SpatialSymbolReference()
SpatialSymbolReference(int level, int version)
SpatialSymbolReference(SpatialSymbolReference ssr)

Method Summary

Modifier and Type	Method and Description
SpatialSymbolReference	clone()
boolean	equals(Object object)
String	getSpatialRef() Returns the value of spatialRef.
boolean	isSetSpatialRef() Returns whether spatialRef is set.
boolean	readAttribute(String attributeName, String prefix, String value)
void	setSpatialRef(String spatialRef) Sets the value of spatialRef
boolean	unsetSpatialRef() Unsets the variable spatialRef.
Map<String,String>	writeXMLAttributes()

Methods inherited from class org.sbml.jsbml.ext.spatial.ParameterType

getAllowsChildren, getChildAt, getChildCount, getGeometryInstance, getSpeciesInstance, getSpeciesReference, getSpId, getVariable, getVariableInstance, hashCode, initDefaults, isSetSpeciesReference, isSetSpId, isSetVariable, setSpeciesReference, setSpId, setVariable

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendAnnotation, appendAnnotation, appendNotes, appendNotes, checkAndSetPackageNamespaceAndVersion, checkAndSetPackageNamespaceAndVersion, checkAttribute, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementByMetaId, getElementBySId, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getId, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getName, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getURI, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isIdMandatory, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetId, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetName, isSetNotes, isSetPackageVErsion, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setAnnotation, setAnnotation, setHistory, setId, setLevel, setMetaId, setName, setNamespace, setNotes, setNotes, setPackageVersion, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetId, unsetMetaId, unsetName, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isReadingInProgress, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, toString, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.SBase

removeTreeNodeChangeListener

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, isLeaf

Constructor Detail

SpatialSymbolReference

public SpatialSymbolReference()

SpatialSymbolReference

public SpatialSymbolReference(SpatialSymbolReference ssr)

Parameters:

ssr -

SpatialSymbolReference

public SpatialSymbolReference(int level,
                              int version)

Parameters:

level -

version -

Method Detail

clone

public SpatialSymbolReference clone()

Specified by:

clone in interface SBase

Overrides:

clone in class ParameterType

equals

public boolean equals(Object object)

Specified by:

equals in interface SBase

Overrides:

equals in class ParameterType

getSpatialRef

public String getSpatialRef()

Returns the value of spatialRef.

Returns:

the value of spatialRef.

isSetSpatialRef

public boolean isSetSpatialRef()

Returns whether spatialRef is set.

Overrides:

isSetSpatialRef in class ParameterType

Returns:

whether spatialRef is set.

setSpatialRef

public void setSpatialRef(String spatialRef)

Sets the value of spatialRef

Parameters:

spatialRef - the value of spatialRef to be set.

unsetSpatialRef

public boolean unsetSpatialRef()

Unsets the variable spatialRef.

Returns:

true if spatialRef was set before, otherwise false.

writeXMLAttributes

public Map<String,String> writeXMLAttributes()

Specified by:

writeXMLAttributes in interface SBase

Overrides:

writeXMLAttributes in class ParameterType

readAttribute

public boolean readAttribute(String attributeName,
                             String prefix,
                             String value)

Specified by:

readAttribute in interface SBase

Overrides:

readAttribute in class ParameterType