Serialized Form

Package org.sbml.jsbml.ext.spatial

Class org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase extends AbstractSBase implements Serializable

serialVersionUID:

-1814806955800042477L

Class org.sbml.jsbml.ext.spatial.AbstractSpatialSBasePlugin extends AbstractSBasePlugin implements Serializable

serialVersionUID:

-75143209163226722L

Class org.sbml.jsbml.ext.spatial.AdjacentDomains extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

1600690320824551145L

Serialized Fields

domain1

java.lang.String domain1

domain2

java.lang.String domain2

Class org.sbml.jsbml.ext.spatial.AdvectionCoefficient extends ParameterType implements Serializable

serialVersionUID:

8982184068116596444L

Serialized Fields

coordinate

CoordinateKind coordinate

Class org.sbml.jsbml.ext.spatial.AnalyticGeometry extends GeometryDefinition implements Serializable

serialVersionUID:

-6680739495215471035L

Serialized Fields

listOfAnalyticVolumes

ListOf<T extends SBase> listOfAnalyticVolumes

Class org.sbml.jsbml.ext.spatial.AnalyticVolume extends AbstractMathContainer implements Serializable

serialVersionUID:

1757917501241390228L

Serialized Fields

domainType

java.lang.String domainType

functionType

FunctionKind functionType

ordinal

java.lang.Integer ordinal

Class org.sbml.jsbml.ext.spatial.Boundary extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

-5283759970799753982L

Serialized Fields

elementName

java.lang.String elementName

the element name

value

java.lang.Double value

Class org.sbml.jsbml.ext.spatial.BoundaryCondition extends ParameterType implements Serializable

serialVersionUID:

-6986768113234565819L

Serialized Fields

boundaryDomainType

java.lang.String boundaryDomainType

coordinateBoundary

java.lang.String coordinateBoundary

type

BoundaryConditionKind type

Class org.sbml.jsbml.ext.spatial.CompartmentMapping extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

-4623759168043277022L

Serialized Fields

domainType

java.lang.String domainType

unitSize

java.lang.Double unitSize

Class org.sbml.jsbml.ext.spatial.CoordinateComponent extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

-3561130269969678307L

Serialized Fields

boundaryMaximum

Boundary boundaryMaximum

boundaryMinimum

Boundary boundaryMinimum

type

CoordinateKind type

unit

java.lang.String unit

Class org.sbml.jsbml.ext.spatial.CoordinateReference extends AbstractSBase implements Serializable

serialVersionUID:

-7651871640808157489L

Serialized Fields

coordinate

CoordinateKind coordinate

Deprecated.

Class org.sbml.jsbml.ext.spatial.CSGeometry extends GeometryDefinition implements Serializable

serialVersionUID:

-3162376343741365280L

Serialized Fields

listOfCSGObjects

ListOf<T extends SBase> listOfCSGObjects

Class org.sbml.jsbml.ext.spatial.CSGHomogeneousTransformation extends CSGTransformation implements Serializable

serialVersionUID:

1247170964151052926L

Serialized Fields

forwardTransformation

TransformationComponent forwardTransformation

reverseTransformation

TransformationComponent reverseTransformation

Class org.sbml.jsbml.ext.spatial.CSGNode extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

5499821335582691196L

Class org.sbml.jsbml.ext.spatial.CSGObject extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

1385748485171648666L

Serialized Fields

csgNode

CSGNode csgNode

domainType

java.lang.String domainType

ordinal

java.lang.Integer ordinal

Class org.sbml.jsbml.ext.spatial.CSGPrimitive extends CSGNode implements Serializable

serialVersionUID:

-6783804853380306509L

Serialized Fields

primitiveType

PrimitiveKind primitiveType

Class org.sbml.jsbml.ext.spatial.CSGPseudoPrimitive extends CSGNode implements Serializable

serialVersionUID:

303742063326104808L

Serialized Fields

csgObjectRef

java.lang.String csgObjectRef

Class org.sbml.jsbml.ext.spatial.CSGRotation extends CSGTransformation implements Serializable

serialVersionUID:

-4799604235135248586L

Serialized Fields

rotateAngleInRadians

java.lang.Double rotateAngleInRadians

rotateAxisX

java.lang.Double rotateAxisX

rotateAxisY

java.lang.Double rotateAxisY

rotateAxisZ

java.lang.Double rotateAxisZ

Class org.sbml.jsbml.ext.spatial.CSGScale extends CSGTransformation implements Serializable

serialVersionUID:

7021488698800177528L

Serialized Fields

scaleX

java.lang.Double scaleX

scaleY

java.lang.Double scaleY

scaleZ

java.lang.Double scaleZ

Class org.sbml.jsbml.ext.spatial.CSGSetOperator extends CSGNode implements Serializable

serialVersionUID:

3448308755493169761L

Serialized Fields

complementA

java.lang.String complementA

complementB

java.lang.String complementB

listOfCSGNodes

ListOf<T extends SBase> listOfCSGNodes

operationType

SetOperation operationType

Class org.sbml.jsbml.ext.spatial.CSGTransformation extends CSGNode implements Serializable

serialVersionUID:

5388780141573233538L

Serialized Fields

csgNode

CSGNode csgNode

Class org.sbml.jsbml.ext.spatial.CSGTranslation extends CSGTransformation implements Serializable

serialVersionUID:

7030963917812170311L

Serialized Fields

translateX

java.lang.Double translateX

translateY

java.lang.Double translateY

translateZ

java.lang.Double translateZ

Class org.sbml.jsbml.ext.spatial.DiffusionCoefficient extends ParameterType implements Serializable

serialVersionUID:

1233063375698575897L

Serialized Fields

coordinateReference1

CoordinateKind coordinateReference1

coordinateReference2

CoordinateKind coordinateReference2

diffusionKind

DiffusionKind diffusionKind

Class org.sbml.jsbml.ext.spatial.Domain extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

7959434109047369076L

Serialized Fields

domainType

java.lang.String domainType

listOfInteriorPoints

ListOf<T extends SBase> listOfInteriorPoints

Class org.sbml.jsbml.ext.spatial.DomainType extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

-1429902642364213170L

Serialized Fields

spatialDimensions

java.lang.Integer spatialDimensions

Class org.sbml.jsbml.ext.spatial.Geometry extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

9115597691155572976L

Serialized Fields

coordinateSystem

GeometryKind coordinateSystem

listOfAdjacentDomains

ListOf<T extends SBase> listOfAdjacentDomains

listOfCoordinateComponents

ListOf<T extends SBase> listOfCoordinateComponents

listOfDomains

ListOf<T extends SBase> listOfDomains

listOfDomainTypes

ListOf<T extends SBase> listOfDomainTypes

listOfGeometryDefinitions

ListOf<T extends SBase> listOfGeometryDefinitions

listOfSampledFields

ListOf<T extends SBase> listOfSampledFields

Class org.sbml.jsbml.ext.spatial.GeometryDefinition extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

211166389798247646L

Serialized Fields

isActive

java.lang.Boolean isActive

Class org.sbml.jsbml.ext.spatial.InteriorPoint extends AbstractSBase implements Serializable

serialVersionUID:

5525511951071345435L

Serialized Fields

coord1

java.lang.Double coord1

coord2

java.lang.Double coord2

coord3

java.lang.Double coord3

Class org.sbml.jsbml.ext.spatial.MixedGeometry extends GeometryDefinition implements Serializable

serialVersionUID:

-7544034155315224945L

Serialized Fields

listOfGeometryDefinitions

ListOf<T extends SBase> listOfGeometryDefinitions

listOfOrdinalMappings

ListOf<T extends SBase> listOfOrdinalMappings

Class org.sbml.jsbml.ext.spatial.OrdinalMapping extends AbstractSBase implements Serializable

serialVersionUID:

-7174553771288567408L

Serialized Fields

geometryDefinition

java.lang.String geometryDefinition

ordinal

java.lang.Integer ordinal

Class org.sbml.jsbml.ext.spatial.ParameterType extends AbstractSBase implements Serializable

serialVersionUID:

1359841900912406174L

Serialized Fields

spatialRef

java.lang.String spatialRef

Refers to the id of any element defined in the Geometry of the model.

variable

java.lang.String variable

Class org.sbml.jsbml.ext.spatial.ParametricGeometry extends GeometryDefinition implements Serializable

serialVersionUID:

5947368889263003716L

Serialized Fields

listOfParametricObjects

ListOf<T extends SBase> listOfParametricObjects

spatialPoints

SpatialPoints spatialPoints

Class org.sbml.jsbml.ext.spatial.ParametricObject extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

-8093810090391511545L

Serialized Fields

compression

CompressionKind compression

dataType

DataKind dataType

domainType

java.lang.String domainType

pointIndex

java.lang.String pointIndex

pointIndexLength

java.lang.Integer pointIndexLength

polygonType

PolygonKind polygonType

Class org.sbml.jsbml.ext.spatial.PolygonObject extends AbstractSBase implements Serializable

serialVersionUID:

-4878021358939009394L

Serialized Fields

pointIndex

java.lang.Integer[] pointIndex

Deprecated.

Class org.sbml.jsbml.ext.spatial.SampledField extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

4345673559248715940L

Serialized Fields

compression

CompressionKind compression

data

XMLNode data

dataType

DataKind dataType

interpolation

InterpolationKind interpolation

numSamples1

java.lang.Integer numSamples1

numSamples2

java.lang.Integer numSamples2

numSamples3

java.lang.Integer numSamples3

samples

java.lang.String samples

samplesLength

java.lang.Integer samplesLength

Class org.sbml.jsbml.ext.spatial.SampledFieldGeometry extends GeometryDefinition implements Serializable

serialVersionUID:

-1541677165317653439L

Serialized Fields

listOfSampledVolumes

ListOf<T extends SBase> listOfSampledVolumes

sampledField

java.lang.String sampledField

Class org.sbml.jsbml.ext.spatial.SampledVolume extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

-8253664900275697978L

Serialized Fields

domainType

java.lang.String domainType

maxValue

java.lang.Double maxValue

minValue

java.lang.Double minValue

sampledValue

java.lang.Double sampledValue

Class org.sbml.jsbml.ext.spatial.SpatialCompartmentPlugin extends AbstractSpatialSBasePlugin implements Serializable

serialVersionUID:

1363097365327594433L

Serialized Fields

compartmentMapping

CompartmentMapping compartmentMapping

Class org.sbml.jsbml.ext.spatial.SpatialModelPlugin extends AbstractSpatialSBasePlugin implements Serializable

serialVersionUID:

8449591192464040411L

Serialized Fields

geometry

Geometry geometry

spatialIdMap

java.util.Map<K extends java.lang.Object,V extends java.lang.Object> spatialIdMap

Class org.sbml.jsbml.ext.spatial.SpatialParameterPlugin extends AbstractSpatialSBasePlugin implements Serializable

serialVersionUID:

-3766260342134204275L

Serialized Fields

param

ParameterType param

Class org.sbml.jsbml.ext.spatial.SpatialPoints extends AbstractSpatialNamedSBase implements Serializable

serialVersionUID:

-3467717442431545263L

Serialized Fields

arrayData

java.lang.String arrayData

arrayDataLength

java.lang.Integer arrayDataLength

compression

CompressionKind compression

dataType

DataKind dataType

Class org.sbml.jsbml.ext.spatial.SpatialReactionPlugin extends AbstractSpatialSBasePlugin implements Serializable

serialVersionUID:

-2154884901226244123L

Serialized Fields

isLocal

java.lang.Boolean isLocal

Class org.sbml.jsbml.ext.spatial.SpatialSpeciesPlugin extends AbstractSpatialSBasePlugin implements Serializable

serialVersionUID:

1636970127352490380L

Serialized Fields

spatial

java.lang.Boolean spatial

Class org.sbml.jsbml.ext.spatial.SpatialSymbolReference extends ParameterType implements Serializable

serialVersionUID:

-8906622500258765056L

Class org.sbml.jsbml.ext.spatial.TransformationComponent extends AbstractSBase implements Serializable

serialVersionUID:

-2905551100912455549L

Serialized Fields

components

java.lang.Double[] components

componentsLength

java.lang.Integer componentsLength