Deprecated API

Contents

• Deprecated Methods
• Deprecated Constructors

Deprecated Methods

Method and Description
org.seqdoop.hadoop_bam.KeyIgnoringAnySAMOutputFormat.getWriteHeader()
org.seqdoop.hadoop_bam.KeyIgnoringAnySAMOutputFormat.setWriteHeader(boolean)

Deprecated Constructors

Constructor and Description
org.seqdoop.hadoop_bam.SplittingBAMIndexer(int) use one of the other constructors to create an index while building a BAM file or SplittingBAMIndexer.index(InputStream, OutputStream, long, int) for an existing BAM file.