Uses of Class
org.seqdoop.hadoop_bam.cli.CLIPlugin

Packages that use CLIPlugin

Package	Description
org.seqdoop.hadoop_bam.cli
org.seqdoop.hadoop_bam.cli.plugins
org.seqdoop.hadoop_bam.cli.plugins.chipster

Uses of CLIPlugin in org.seqdoop.hadoop_bam.cli

Subclasses of CLIPlugin in org.seqdoop.hadoop_bam.cli

Modifier and Type	Class and Description
class	CLIMRBAMPlugin Like CLIMRPlugin, with added useful defaults for plugins working solely on BAM/SAM files.
class	CLIMRPlugin Like CLIPlugin, but has lots of useful defaults for MapReduce-using plugins.

Method parameters in org.seqdoop.hadoop_bam.cli with type arguments of type CLIPlugin

Modifier and Type	Method and Description
static void	Frontend.usage(PrintStream out, Map<String,CLIPlugin> plugins)

Uses of CLIPlugin in org.seqdoop.hadoop_bam.cli.plugins

Subclasses of CLIPlugin in org.seqdoop.hadoop_bam.cli.plugins

Modifier and Type	Class and Description
class	Cat
class	FixMate
class	Index
class	Sort
class	VCFSort
class	View

Uses of CLIPlugin in org.seqdoop.hadoop_bam.cli.plugins.chipster

Subclasses of CLIPlugin in org.seqdoop.hadoop_bam.cli.plugins.chipster

Modifier and Type	Class and Description
class	Summarize
class	SummarySort