Uses of Class
org.seqdoop.hadoop_bam.custom.jargs.gnu.CmdLineParser.Option

Packages that use CmdLineParser.Option

Package	Description
org.seqdoop.hadoop_bam.cli
org.seqdoop.hadoop_bam.custom.jargs.gnu

Uses of CmdLineParser.Option in org.seqdoop.hadoop_bam.cli

Fields in org.seqdoop.hadoop_bam.cli declared as CmdLineParser.Option

Modifier and Type	Field and Description
protected static CmdLineParser.Option	CLIMRBAMPlugin.formatOpt
protected static CmdLineParser.Option	CLIMRBAMPlugin.noTrustExtsOpt
protected static CmdLineParser.Option	CLIMRPlugin.outputPathOpt
protected static CmdLineParser.Option	CLIMRPlugin.reducersOpt
protected static CmdLineParser.Option	CLIMRPlugin.verboseOpt

Fields in org.seqdoop.hadoop_bam.cli with type parameters of type CmdLineParser.Option

Modifier and Type	Field and Description
protected List<Pair<CmdLineParser.Option,String>>	CLIPlugin.optionDescriptions

Constructor parameters in org.seqdoop.hadoop_bam.cli with type arguments of type CmdLineParser.Option

Constructor and Description
CLIMRBAMPlugin(String commandName, String description, String version, String usageParams, List<Pair<CmdLineParser.Option,String>> optionDescs, String longDescription)
CLIMRPlugin(String commandName, String description, String version, String usageParams, List<Pair<CmdLineParser.Option,String>> optionDescs, String longDescription)
CLIPlugin(String commandName, String description, String version, String usageParams, List<Pair<CmdLineParser.Option,String>> optionDescriptions, String longDescription)

Uses of CmdLineParser.Option in org.seqdoop.hadoop_bam.custom.jargs.gnu

Subclasses of CmdLineParser.Option in org.seqdoop.hadoop_bam.custom.jargs.gnu

Modifier and Type	Class and Description
static class	CmdLineParser.Option.BooleanOption
static class	CmdLineParser.Option.DoubleOption An option that expects a floating-point value
static class	CmdLineParser.Option.IntegerOption An option that expects an integer value
static class	CmdLineParser.Option.LongOption An option that expects a long integer value
static class	CmdLineParser.Option.StringOption An option that expects a string value

Methods in org.seqdoop.hadoop_bam.custom.jargs.gnu that return CmdLineParser.Option

Modifier and Type	Method and Description
CmdLineParser.Option	CmdLineParser.addBooleanOption(char shortForm, String longForm) Convenience method for adding a boolean option.
CmdLineParser.Option	CmdLineParser.addBooleanOption(String longForm) Convenience method for adding a boolean option.
CmdLineParser.Option	CmdLineParser.addDoubleOption(char shortForm, String longForm) Convenience method for adding a double option.
CmdLineParser.Option	CmdLineParser.addDoubleOption(String longForm) Convenience method for adding a double option.
CmdLineParser.Option	CmdLineParser.addIntegerOption(char shortForm, String longForm) Convenience method for adding an integer option.
CmdLineParser.Option	CmdLineParser.addIntegerOption(String longForm) Convenience method for adding an integer option.
CmdLineParser.Option	CmdLineParser.addLongOption(char shortForm, String longForm) Convenience method for adding a long integer option.
CmdLineParser.Option	CmdLineParser.addLongOption(String longForm) Convenience method for adding a long integer option.
CmdLineParser.Option	CmdLineParser.addOption(CmdLineParser.Option opt) Add the specified Option to the list of accepted options
CmdLineParser.Option	CmdLineParser.addStringOption(char shortForm, String longForm) Convenience method for adding a string option.
CmdLineParser.Option	CmdLineParser.addStringOption(String longForm) Convenience method for adding a string option.
CmdLineParser.Option	CmdLineParser.IllegalOptionValueException.getOption()

Methods in org.seqdoop.hadoop_bam.custom.jargs.gnu with parameters of type CmdLineParser.Option

Modifier and Type	Method and Description
CmdLineParser.Option	CmdLineParser.addOption(CmdLineParser.Option opt) Add the specified Option to the list of accepted options
boolean	CmdLineParser.getBoolean(CmdLineParser.Option opt)
int	CmdLineParser.getInt(CmdLineParser.Option opt, int def)
Object	CmdLineParser.getOptionValue(CmdLineParser.Option o) Equivalent to getOptionValue(o, null).
Object	CmdLineParser.getOptionValue(CmdLineParser.Option o, Object def)
List<Object>	CmdLineParser.getOptionValues(CmdLineParser.Option option)

Constructors in org.seqdoop.hadoop_bam.custom.jargs.gnu with parameters of type CmdLineParser.Option

Constructor and Description
IllegalOptionValueException(CmdLineParser.Option opt, String value)