Package org.seqdoop.hadoop_bam.util

Class Summary

Class	Description
BGZFBlockIndex	An index into BGZF-compressed files, for BGZFSplitFileInputFormat.
BGZFBlockIndexer	An indexing tool for BGZF-compressed files, making them palatable to BGZFSplitFileInputFormat.
BGZFSplitFileInputFormat<K,V>	An InputFormat for BGZF-compressed files.
BGZFSplitGuesser
ConfHelper
DataInputWrapper
DataOutputWrapper
GetSortedBAMHeader
MurmurHash3	This class implements a hash function giving the first 64 bits of the MurmurHash3_x64_128 hash.
Pair<A,B>
SAMHeaderReader
SAMOutputPreparer
SeekableArrayStream
Timer
VCFHeaderReader	Can read a VCF header without being told beforehand whether the input is VCF or BCF.
WrapSeekable<S extends InputStream & org.apache.hadoop.fs.Seekable>	Wraps Hadoop's "seekable stream" abstraction so that we can give such a one to BlockCompressedInputStream and retain seekability.