Serialized Form

Package org.seqdoop.hadoop_bam

Class org.seqdoop.hadoop_bam.FormatException extends RuntimeException implements Serializable

serialVersionUID:

1L

Class org.seqdoop.hadoop_bam.LazyBCFGenotypesContext extends LazyParsingGenotypesContext implements Serializable

Class org.seqdoop.hadoop_bam.LazyParsingGenotypesContext extends htsjdk.variant.variantcontext.LazyGenotypesContext implements Serializable

Serialized Fields

parserCopy

LazyParsingGenotypesContext.Parser parserCopy

Class org.seqdoop.hadoop_bam.LazyVCFGenotypesContext extends LazyParsingGenotypesContext implements Serializable

Class org.seqdoop.hadoop_bam.VariantContextWithHeader extends htsjdk.variant.variantcontext.VariantContext implements Serializable

Serialized Fields

header

htsjdk.variant.vcf.VCFHeader header

Package org.seqdoop.hadoop_bam.custom.jargs.gnu

Class org.seqdoop.hadoop_bam.custom.jargs.gnu.CmdLineParser.IllegalOptionValueException extends CmdLineParser.OptionException implements Serializable

Serialized Fields

option

CmdLineParser.Option option

value

String value

Class org.seqdoop.hadoop_bam.custom.jargs.gnu.CmdLineParser.NotFlagException extends CmdLineParser.UnknownOptionException implements Serializable

Serialized Fields

notflag

char notflag

Class org.seqdoop.hadoop_bam.custom.jargs.gnu.CmdLineParser.OptionException extends Exception implements Serializable

Class org.seqdoop.hadoop_bam.custom.jargs.gnu.CmdLineParser.UnknownOptionException extends CmdLineParser.OptionException implements Serializable

Serialized Fields

optionName

String optionName

Class org.seqdoop.hadoop_bam.custom.jargs.gnu.CmdLineParser.UnknownSuboptionException extends CmdLineParser.UnknownOptionException implements Serializable

Serialized Fields

suboption

char suboption