Deprecated API

Contents

• Deprecated Classes
• Deprecated Methods
• Deprecated Constructors

Deprecated Classes

Class and Description
org.seqdoop.hadoop_bam.util.Pair This class will be removed in the next major version release (8.0).
org.seqdoop.hadoop_bam.util.SeekableArrayStream Use ByteArraySeekableStream. This class will be removed in the next major version release (8.0).
org.seqdoop.hadoop_bam.util.Timer This class will be removed in the next major version release (8.0).

Deprecated Methods

Method and Description
org.seqdoop.hadoop_bam.KeyIgnoringAnySAMOutputFormat.getWriteHeader()
org.seqdoop.hadoop_bam.KeyIgnoringAnySAMOutputFormat.setWriteHeader(boolean)

Deprecated Constructors

Constructor and Description
org.seqdoop.hadoop_bam.SplittingBAMIndexer(int) use one of the other constructors to create an index while building a BAM file or SplittingBAMIndexer.index(InputStream, OutputStream, long, int) for an existing BAM file.