org.seqdoop.hadoop_bam

Class QseqOutputFormat.QseqRecordWriter

java.lang.Object

org.apache.hadoop.mapreduce.RecordWriter<org.apache.hadoop.io.Text,SequencedFragment>

org.seqdoop.hadoop_bam.QseqOutputFormat.QseqRecordWriter

Enclosing class:

QseqOutputFormat

public static class QseqOutputFormat.QseqRecordWriter
extends org.apache.hadoop.mapreduce.RecordWriter<org.apache.hadoop.io.Text,SequencedFragment>

Field Summary

Fields

Modifier and Type	Field and Description
protected OutputStream	out
protected StringBuilder	sBuilder

Constructor Summary

Constructors

Constructor and Description
QseqRecordWriter(org.apache.hadoop.conf.Configuration conf, OutputStream out)

Method Summary

Modifier and Type	Method and Description
void	close(org.apache.hadoop.mapreduce.TaskAttemptContext context)
void	setConf(org.apache.hadoop.conf.Configuration conf)
void	write(org.apache.hadoop.io.Text ignored_key, SequencedFragment seq)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

sBuilder

protected StringBuilder sBuilder

out

protected OutputStream out

Constructor Detail

QseqRecordWriter

public QseqRecordWriter(org.apache.hadoop.conf.Configuration conf,
                        OutputStream out)

Method Detail

setConf

public void setConf(org.apache.hadoop.conf.Configuration conf)

write

public void write(org.apache.hadoop.io.Text ignored_key,
                  SequencedFragment seq)
           throws IOException

Specified by:

write in class org.apache.hadoop.mapreduce.RecordWriter<org.apache.hadoop.io.Text,SequencedFragment>

Throws:

IOException

close

public void close(org.apache.hadoop.mapreduce.TaskAttemptContext context)
           throws IOException

Specified by:

close in class org.apache.hadoop.mapreduce.RecordWriter<org.apache.hadoop.io.Text,SequencedFragment>

Throws:

IOException